ViewGene
Locus Name:
GeneID:
Location:

GeneID:5532
TrivialName: PA14_54280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54280
PAO1 Ortholog Locus:
Sequence Length:819
Protein Length:272
Start: 4816080
Stop: 4816898
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCTTTCATCCGCCCCGCAGGTCGACGGCAAGCGGGGCGCGATTGCCTCAGCGCTTGGTCGCCGCGGCCAG
CATCAGCGCTTTCATCTCAGCCACCGCCTGCCTGAAGCCGACGAACAGGGCGTGGGCGACGATGGCGTGGCC
GATGTTCAGCTCGTTGATGCCGTCGATGGCCGCGACCGGCTCGACATTGTGGTAGTGCAGGCCATGCCCGGC
GTTGACGATCAGGCCGAGGGAACGCCCAAGGGCCACGCCCTCGCGTACCCGCTGCAGCTCACGGGCCTGCTC
CTCGGGGTCTTCGGCGTCGGCGTAGCGACCGGTATGCAGTTCGATAGCCGGCGCGCCGACCCGGGCGGAGGC
CTCGATCTGCCGCGGATCGGGATCGATGAACAGCGACACTTCGCTGCCCACCGCAGCCAGGCGTCGCACCGC
GTCGCGGATGCGCTGTTCCTGGCCGGCGACGTCGAGGCCGCCCTCGGTGGTCAGTTCCTCGCGGCGCTCGGG
GACCAGGCAGCTATGCGCCGGCCGGATCTCCTCGGCGAAGGCGAGCATTTCCTCGGTGACCCCCATCTCGAA
GTTCATCCGCGTCTGCAGCACTTCCTTGAGCACCCGCACGTCGCGTTCCTGGATATGCCGGCGGTCCTCGCG
CAGGTGCACGGTGATACCGTCGGCGCCGGCTTCCTCGGCGTCCAGGGCGGCCTTCACCGGGTCCGGATAGCG
GGTGCCCCGGGCCTGGCGCAGGGTGGCGACGTGATCGATGTTCACGCCGAGCAGAATTCGAGTGGCTTCAGT
CACGGGGTGACTCCTTACGGTTCATGA
Translation:
MLSSAPQVDGKRGAIASALGRRGQHQRFHLSHRLPEADEQGVGDDGVADVQLVDAVDGRDRLDIVVVQAMPG
VDDQAEGTPKGHALAYPLQLTGLLLGVFGVGVATGMQFDSRRADPGGGLDLPRIGIDEQRHFAAHRSQASHR
VADALFLAGDVEAALGGQFLAALGDQAAMRRPDLLGEGEHFLGDPHLEVHPRLQHFLEHPHVAFLDMPAVLA
QVHGDTVGAGFLGVQGGLHRVRIAGAPGLAQGGDVIDVHAEQNSSGFSHGVTPYGS*
AnnotationID:5534GeneID:5532
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48534How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 137827Stop: 137009

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTTTCATCCGCCCCGCAGGTCGACGGCAAGCGGGGCGCGATTGCCTCAGCGCTTGGTCGCCGCGGCCAG 
CATCAGCGCTTTCATCTCAGCCACCGCCTGCCTGAAGCCGACGAACAGGGCGTGGGCGACGATGGCGTGGCC 
GATGTTCAGCTCGTTGATGCCGTCGATGGCCGCGACCGGCTCGACATTGTGGTAGTGCAGGCCATGCCCGGC 
GTTGACGATCAGGCCGAGGGAACGCCCAAGGGCCACGCCCTCGCGTACCCGCTGCAGCTCACGGGCCTGCTC 
CTCGGGGTCTTCGGCGTCGGCGTAGCGACCGGTATGCAGTTCGATAGCCGGCGCGCCGACCCGGGCGGAGGC 
CTCGATCTGCCGCGGATCGGGATCGATGAACAGCGACACTTCGCTGCCCACCGCAGCCAGGCGTCGCACCGC 
GTCGCGGATGCGCTGTTCCTGGCCGGCGACGTCGAGGCCGCCCTCGGTGGTCAGTTCCTCGCGGCGCTCGGG 
GACCAGGCAGCTATGCGCCGGCCGGATCTCCTCGGCGAAGGCGAGCATTTCCTCGGTGACCCCCATCTCGAA 
GTTCATCCGCGTCTGCAGCACTTCCTTGAGCACCCGCACGTCGCGTTCCTGGATATGCCGGCGGTCCTCGCG 
CAGGTGCACGGTGATACCGTCGGCGCCGGCTTCCTCGGCGTCCAGGGCGGCCTTCACCGGGTCCGGATAGCG 
GGTGCCCCGGGCCTGGCGCAGGGTGGCGACGTGATCGATGTTCACGCCGAGCAGAATTCGAGTGGCTTCAGT 
CACGGGGTGACTCCTTACGGTTCATGA