ViewGene
Locus Name:
GeneID:
Location:

GeneID:5504
TrivialName: PA14_55080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55080
PAO1 Ortholog Locus:
Sequence Length:1206
Protein Length:401
Start: 4893060
Stop: 4894265
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN25534.1|AE014809_3 (AE014809) exonuclease VII, large subunit [Bifidobacterium longum NCC2705]
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Sequence:
ATGGCGAAGGACCTCAACGGCCTGGCGCGGTCGTTTGCCACAAACGTTTGTACGTTCCCTCTCCAATGCTTG
AGTCGGCGGCAAGCCAGCGCCAGCCTCAGTTCAATACGATGGGTGGACATTGTGATGAATTCAGCCAATGGA
ATCGACATACCCGCCTCTCCAGCCGGCGAGCTGGCACTGACCCCCGAGGCGCTCGCCGAGACACTGAGGGTT
AATGCGCCCAGTGGTCCTGTCACCGTCAAAGGCATGGCCACCGATGTGAAGTACTGGTCGAGGAATGGGGAC
GACAAGGTTCTCAAGATATATGGCCGCCTGGTACTGGGGGATGCCAGTATCCGCTTCGAATTGCAGCCCCAC
GCTGCTGTCCGCAATGATGCTCCCGTCGTTCTCCATGGCTCACTGCGCATCAAGAAGTCGGAGACATTCCGC
ACGACCCACGAAGTCATCCTGGTGGGTGATGTCGTCGGTAGCTGGGTACCCTATGAGCCGGTCCCCCTTGTG
TCACCCGCCCCCCTGGTACGCCAGCAACCGCGGGTGTCCCTGGAGGCGGCACTCGCCAAACACGGACTGGAA
GCCATCGCTATACTCGCCACCGGCACGGCCTGGAACGACCTGGCGGCAGCGGCACAATCGCTCCCCGTCTTC
TCCCACTGTCGCAGGGTAGAGACGAATTTCATGGAGCCCGAGCAGTTCCTAAGCGACCTGGCCAAGGTATGC
CAAGACCCCGCCATTCAAGTGCTGGTGATTGCTAGAGGCGGCGGTGATAGCCTGGAAGTCATCGGAGATTCA
CGGGAGGTGGCCTGTGCGCTATTGGCCTGCGGGCGCCCGTTCTATACGGCTCTGGGGCACGACGACAATGTG
ATGTTGCTGGACAAGCATGCGGACCGGTCGTTCTCCACACCGTCCATCCTGGGGCAGGCACTGATGGAGACC
GCCCGCGACATCACACAACGGCAGGAGCTGCAGGAGAGCCTGGGCAAATTCGCCCAGGAAAACGCATCGCTG
AAAGAACAACTGCTCCAGGCGAACGCCCGCCTGGAGCAGAACCTGGCCAAGGAGCCGTCGGCCATTCATGAG
GCGGACAGCCAAAAAGGAATCGTCGCGCAAGTCCCTGTACCAGCGCCCACCCCTGAAATGCGCAGGTACGTC
ATATGGGCGATTGCGCTTCTGGTGGTCTTTGCCATCGGCCGTTGCTCGACGTGA
Translation:
MAKDLNGLARSFATNVCTFPLQCLSRRQASASLSSIRWVDIVMNSANGIDIPASPAGELALTPEALAETLRV
NAPSGPVTVKGMATDVKYWSRNGDDKVLKIYGRLVLGDASIRFELQPHAAVRNDAPVVLHGSLRIKKSETFR
TTHEVILVGDVVGSWVPYEPVPLVSPAPLVRQQPRVSLEAALAKHGLEAIAILATGTAWNDLAAAAQSLPVF
SHCRRVETNFMEPEQFLSDLAKVCQDPAIQVLVIARGGGDSLEVIGDSREVACALLACGRPFYTALGHDDNV
MLLDKHADRSFSTPSILGQALMETARDITQRQELQESLGKFAQENASLKEQLLQANARLEQNLAKEPSAIHE
ADSQKGIVAQVPVPAPTPEMRRYVIWAIALLVVFAIGRCST*
AnnotationID:5508GeneID:5504
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|23327047|gb|AAN25534.1|  exonuclease VII, large subunit [Bifidobacterium longum NCC2705]
     Length=456
     Score = 60.5 bits (145),  Expect = 1e-07
     Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)






 
Structural Features:
COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair]
       CD-Length = 440 residues, only  26.6% aligned
       Score = 50.7 bits (121), Expect = 3e-07







   
Genomic Context:






   
Comment:


















    ReferenceID:11003




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28146




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48506How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 60847Stop: 59642

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGAAGGACCTCAACGGCCTGGCGCGGTCGTTTGCCACAAACGTTTGTACGTTCCCTCTCCAATGCTTG 
AGTCGGCGGCAAGCCAGCGCCAGCCTCAGTTCAATACGATGGGTGGACATTGTGATGAATTCAGCCAATGGA 
ATCGACATACCCGCCTCTCCAGCCGGCGAGCTGGCACTGACCCCCGAGGCGCTCGCCGAGACACTGAGGGTT 
AATGCGCCCAGTGGTCCTGTCACCGTCAAAGGCATGGCCACCGATGTGAAGTACTGGTCGAGGAATGGGGAC 
GACAAGGTTCTCAAGATATATGGCCGCCTGGTACTGGGGGATGCCAGTATCCGCTTCGAATTGCAGCCCCAC 
GCTGCTGTCCGCAATGATGCTCCCGTCGTTCTCCATGGCTCACTGCGCATCAAGAAGTCGGAGACATTCCGC 
ACGACCCACGAAGTCATCCTGGTGGGTGATGTCGTCGGTAGCTGGGTACCCTATGAGCCGGTCCCCCTTGTG 
TCACCCGCCCCCCTGGTACGCCAGCAACCGCGGGTGTCCCTGGAGGCGGCACTCGCCAAACACGGACTGGAA 
GCCATCGCTATACTCGCCACCGGCACGGCCTGGAACGACCTGGCGGCAGCGGCACAATCGCTCCCCGTCTTC 
TCCCACTGTCGCAGGGTAGAGACGAATTTCATGGAGCCCGAGCAGTTCCTAAGCGACCTGGCCAAGGTATGC 
CAAGACCCCGCCATTCAAGTGCTGGTGATTGCTAGAGGCGGCGGTGATAGCCTGGAAGTCATCGGAGATTCA 
CGGGAGGTGGCCTGTGCGCTATTGGCCTGCGGGCGCCCGTTCTATACGGCTCTGGGGCACGACGACAATGTG 
ATGTTGCTGGACAAGCATGCGGACCGGTCGTTCTCCACACCGTCCATCCTGGGGCAGGCACTGATGGAGACC 
GCCCGCGACATCACACAACGGCAGGAGCTGCAGGAGAGCCTGGGCAAATTCGCCCAGGAAAACGCATCGCTG 
AAAGAACAACTGCTCCAGGCGAACGCCCGCCTGGAGCAGAACCTGGCCAAGGAGCCGTCGGCCATTCATGAG 
GCGGACAGCCAAAAAGGAATCGTCGCGCAAGTCCCTGTACCAGCGCCCACCCCTGAAATGCGCAGGTACGTC 
ATATGGGCGATTGCGCTTCTGGTGGTCTTTGCCATCGGCCGTTGCTCGACGTGA