ViewGene
Locus Name:
GeneID:
Location:

GeneID:5485
TrivialName: PA14_17710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17710
PAO1 Ortholog Locus:PA3600
Sequence Length:153
Protein Length:50
Start: 1522251
Stop: 1522403
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06988.1|AE004780_7 (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 50/50 (100%), Positives = 50/50 (100%)
Sequence:
ATGAAAGTCCTCGCCTCGCTGAAACAGGCCAAGCTGCGCCATCGCGATTGCCAGGTGGTGAAGCGCCGTGGC
CGGCTCTACGTGATCTGCAAGTCGAATCCGCGCTTCAAGTGCGTGCAGGGCCGGCCGAAGCCGAAGATCAAG
CGCCGCTGA
Translation:
MKVLASLKQAKLRHRDCQVVKRRGRLYVICKSNPRFKCVQGRPKPKIKRR*
AnnotationID:5490GeneID:5485
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 12:12:49
Gene Name:
Confidence Code:3
GeneProduct:putative 50S ribosomal protein L36
Cell Localization:()
Synonyms:PA3600
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN78887.1|AE016756_70 (AE016756) Putative 50S ribosomal protein L36 [Escherichia coli
          CFT073]
          Length = 47

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 35/46 (76%), Positives = 39/46 (84%)

>gb|AAF94041.1| (AE004172) ribosomal protein L36, putative [Vibrio cholerae]
          Length = 41

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 34/40 (85%), Positives = 36/40 (90%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10965




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31941




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5485_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5485
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7879
                           PA3600_tr
                           translation of PA3600
                           50
                           99.99
                           99.99
                           0
                           263.0
     

     
     
196958
                           gb|AAG06988.1|AE004780_7
                           (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           50
                           99.99
                           99.99
                           0
                           263.0
     

     






      

          
GC ORFID: 48487How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3600Glimmer Score: 

          
Start: 3431685Stop: 3431533

          
Length: 153


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3600 translation of PA3600Homolog Bit Score 105.0

          
Other Homologs:  t_PA3600 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTCCTCGCCTCGCTGAAACAGGCCAAGCTGCGCCATCGCGATTGCCAGGTGGTGAAGCGCCGTGGC 
CGGCTCTACGTGATCTGCAAGTCGAATCCGCGCTTCAAGTGCGTGCAGGGCCGGCCGAAGCCGAAGATCAAG 
CGCCGCTGA