ViewGene
Locus Name:
GeneID:
Location:

GeneID:548
TrivialName: PA14_10040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10040
PAO1 Ortholog Locus:PA4163
Sequence Length:1710
Protein Length:569
Start: 864247
Stop: 862538
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07550.1|AE004833_1 (AE004833) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 568/569 (99%), Positives = 568/569 (99%)
Sequence:
ATGATCGAGGTCACCGAGGTTTCCATCGCCGAGCTGCGTGACGCGCTCGAGTCCGGTCGTACCACGGCGGTC
GAACTGGTCCAGGCCTACCTGGCGCGGATCGACGCCTACGATGCACCCGGCACGCCCACCGCGCTGAACGCG
GTGGTGGTGCGCAATCCCGATGCGCTGGCCGAAGCGCAGGCCTCCGACGCCCGCCGGGCGCGTGGCGAGACC
CTCGGTCCGCTGGACGGCATTCCCTACACCGCCAAGGACAGCTACCTGGTCAAGGGCCTCACCGCGGCTTCC
GGCAGCCCGGCGTTCAAGGACCTGGTGGCCCAGCGCGATGCCTTCACCGTCGAGCGCCTGCGCGCCGCCGGG
GCGATCTGCCTGGGCAAGACCAACATGCCGCCCATGGCCAACGGCGGCATGCAGCGCGGCGTCTACGGCCGC
GCGGAGAGCCCGTACAATGCCGCCTACCTCACCGCGCCCTTCGCCTCGGGGTCCTCCAATGGCGCCGGCACC
GCCACCGCGGCCAGCTTCGCCGCCTTCGGCCTGGCCGAGGAAACCTGGTCGAGCGGGCGCGGCCCGGCGTCG
AACAACGGCCTGTGCGCCTACACCCCTTCGCGCGGGGTGATCTCGGTGCGCGGCAACTGGCCGCTGACGCCG
ACCATGGACGTGGTGGTGCCCTATGCGCGGAGCATGGCCGACCTGCTGGAAATCCTCGACGTGGTGGTCGCC
GACGATCCCGATACCcGCGGCGACCTCTGGCGCATGCAGCCCTGGGTGCCGATCCCCAAGGCCTCCGAGGTA
CGCCCGGCGAGCTACCCGGCCCTGGCCGCAGGCGCCGAGGCCCTGGCCGGCAAGCGCTTCGGCGTGCCGCGC
ATGTTCATCAACGCCGACCCCGATGCGGGCACCAGCGAGTCCCCCGGGATCGGCGGCCCGACCGGCCAGCGC
ATCCATACCCGGCCCTCGGTCATCGCCCTCTGGGAACAGGCGCGCAAGGCCCTGGAAGCCGCCGGCGCCGAA
GTGATCGAGGTGGACTTCCCGCTGGTGTCGAACTGCGAGGGCGACCGACCCGGCGCGCCCACCGTGTTCAAC
CGCGGCCTGGTGTCGAAGGAATTCCTCCACGACGAGCTGTGGGAACTCTCGGCCTGGGGCTTCGACGACTTC
CTGCGCGCCAATGGCGATCCGAAGCTGAACCGCCTGGCGGATGTCGACGGCCCGCAGATCTTCCCCCACGAC
CCCGGCACCCTGCCCAACCGCGAGGGCGACCTGGCCGCCGGCATGGACGAATACGTGCGGATGGCCGAGCGC
GGCATCAAGCCCTGGGACCGGATCGCGACCCTCCCCGATGGCCTGCGCGGCCTTGAGGAAACCCGGCGGATC
GACCTCGAGGAGTGGATGCGACGCCTGCGCCTGGACGCCGTGCTCTTCCCCACCGTCGCCGACGTCGGCCCG
GCGGACGCCGACGTCAACCCGGCCTCGGCCGACATCGCCTGGAGCAACGGTGTCTGGGTCGCCAACGGCAAC
CTCGCCATCCGCCACCTCGGCGTGCCGACGGTCACCGTACCGATGGGGGTGATGGCCGACATCGGCATGCCG
GTGGGCCTGACCTTCGCCGGCCGCGCCTACGACGACTCGGCGCTGCTGCGCTTCGCCGCGGCCTTCGAGTCG
ACCGGCTCGCGGCGTATCGTGCCGCCGCGTACTCCACCGCTGGCAAGCAAGTGA
Translation:
MIEVTEVSIAELRDALESGRTTAVELVQAYLARIDAYDAPGTPTALNAVVVRNPDALAEAQASDARRARGET
LGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTVERLRAAGAICLGKTNMPPMANGGMQRGVYGR
AESPYNAAYLTAPFASGSSNGAGTATAASFAAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTP
TMDVVVPYARSMADLLEILDVVVADDPDTRGDLWRMQPWVPIPKASEVRPASYPALAAGAEALAGKRFGVPR
MFINADPDAGTSESPGIGGPTGQRIHTRPSVIALWEQARKALEAAGAEVIEVDFPLVSNCEGDRPGAPTVFN
RGLVSKEFLHDELWELSAWGFDDFLRANGDPKLNRLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVRMAER
GIKPWDRIATLPDGLRGLEETRRIDLEEWMRRLRLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGN
LAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDSALLRFAAAFESTGSRRIVPPRTPPLASK*
AnnotationID:557GeneID:548
AnnotatorUID: urbach
Modification Date/Time: 2004-03-08 17:05:30
Gene Name:
Confidence Code:3
GeneProduct:amidase family protein
Cell Localization:()
Synonyms:PA4163
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0154,pfam01425,KOG1211,KOG1212
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17085




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:548_CDD.html


    		




 
URL:

















    ReferenceID:18241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:548
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
949
                           PA4163_tr
                           translation of PA4163
                           569
                           99.82
                           99.82
                           0
                           2949.0
     

     
     
38145
                           gb|AAG07550.1|AE004833_1
                           (AE004833) hypothetical protein PA4163 [Pseudomonas aeruginosa PAO1]
                           569
                           99.82
                           99.82
                           0
                           2949.0
     

     
     
38146
                           gb|AAN68540.1|AE016486_3
                           (AE016785) amidase family protein [Pseudomonas putida KT2440]
                           569
                           86.99
                           93.14
                           2
                           2611.0
     

     
     
38147
                           gb|AAN53964.1|AE015534_3
                           (AE015534) amidase family protein [Shewanella oneidensis MR-1]
                           569
                           84.35
                           90.68
                           1
                           2513.0
     

     
     
38148
                           dbj|BAB49469.1|
                           (AP002999) probable amidase [Mesorhizobium loti]
                           691
                           53.83
                           60.78
                           141
                           1863.0
     

     






      

          
GC ORFID: 43550How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4163Glimmer Score: 

          
Start: 4089690Stop: 4091399

          
Length: 1710


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4163 translation of PA4163Homolog Bit Score 1140.0

          
Other Homologs:  t_PA4163 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAGGTCACCGAGGTTTCCATCGCCGAGCTGCGTGACGCGCTCGAGTCCGGTCGTACCACGGCGGTC 
GAACTGGTCCAGGCCTACCTGGCGCGGATCGACGCCTACGATGCACCCGGCACGCCCACCGCGCTGAACGCG 
GTGGTGGTGCGCAATCCCGATGCGCTGGCCGAAGCGCAGGCCTCCGACGCCCGCCGGGCGCGTGGCGAGACC 
CTCGGTCCGCTGGACGGCATTCCCTACACCGCCAAGGACAGCTACCTGGTCAAGGGCCTCACCGCGGCTTCC 
GGCAGCCCGGCGTTCAAGGACCTGGTGGCCCAGCGCGATGCCTTCACCGTCGAGCGCCTGCGCGCCGCCGGG 
GCGATCTGCCTGGGCAAGACCAACATGCCGCCCATGGCCAACGGCGGCATGCAGCGCGGCGTCTACGGCCGC 
GCGGAGAGCCCGTACAATGCCGCCTACCTCACCGCGCCCTTCGCCTCGGGGTCCTCCAATGGCGCCGGCACC 
GCCACCGCGGCCAGCTTCGCCGCCTTCGGCCTGGCCGAGGAAACCTGGTCGAGCGGGCGCGGCCCGGCGTCG 
AACAACGGCCTGTGCGCCTACACCCCTTCGCGCGGGGTGATCTCGGTGCGCGGCAACTGGCCGCTGACGCCG 
ACCATGGACGTGGTGGTGCCCTATGCGCGGAGCATGGCCGACCTGCTGGAAATCCTCGACGTGGTGGTCGCC 
GACGATCCCGATACCcGCGGCGACCTCTGGCGCATGCAGCCCTGGGTGCCGATCCCCAAGGCCTCCGAGGTA 
CGCCCGGCGAGCTACCCGGCCCTGGCCGCAGGCGCCGAGGCCCTGGCCGGCAAGCGCTTCGGCGTGCCGCGC 
ATGTTCATCAACGCCGACCCCGATGCGGGCACCAGCGAGTCCCCCGGGATCGGCGGCCCGACCGGCCAGCGC 
ATCCATACCCGGCCCTCGGTCATCGCCCTCTGGGAACAGGCGCGCAAGGCCCTGGAAGCCGCCGGCGCCGAA 
GTGATCGAGGTGGACTTCCCGCTGGTGTCGAACTGCGAGGGCGACCGACCCGGCGCGCCCACCGTGTTCAAC 
CGCGGCCTGGTGTCGAAGGAATTCCTCCACGACGAGCTGTGGGAACTCTCGGCCTGGGGCTTCGACGACTTC 
CTGCGCGCCAATGGCGATCCGAAGCTGAACCGCCTGGCGGATGTCGACGGCCCGCAGATCTTCCCCCACGAC 
CCCGGCACCCTGCCCAACCGCGAGGGCGACCTGGCCGCCGGCATGGACGAATACGTGCGGATGGCCGAGCGC 
GGCATCAAGCCCTGGGACCGGATCGCGACCCTCCCCGATGGCCTGCGCGGCCTTGAGGAAACCCGGCGGATC 
GACCTCGAGGAGTGGATGCGACGCCTGCGCCTGGACGCCGTGCTCTTCCCCACCGTCGCCGACGTCGGCCCG 
GCGGACGCCGACGTCAACCCGGCCTCGGCCGACATCGCCTGGAGCAACGGTGTCTGGGTCGCCAACGGCAAC 
CTCGCCATCCGCCACCTCGGCGTGCCGACGGTCACCGTACCGATGGGGGTGATGGCCGACATCGGCATGCCG 
GTGGGCCTGACCTTCGCCGGCCGCGCCTACGACGACTCGGCGCTGCTGCGCTTCGCCGCGGCCTTCGAGTCG 
ACCGGCTCGCGGCGTATCGTGCCGCCGCGTACTCCACCGCTGGCAAGCAAGTGA