ViewGene
Locus Name:
GeneID:
Location:

GeneID:5475
TrivialName: PA14_58860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58860
PAO1 Ortholog Locus:PA4537
Sequence Length:171
Protein Length:56
Start: 5242047
Stop: 5242217
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07925.1|AE004867_11 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 56/56 (100%), Positives = 56/56 (100%)
Sequence:
ATGTCCAGCCGACTGAGCCCCGAAGACCAGCAGAAGGTCGAGCAGTACCTCGCCTCGCCGCTGCACCAGGTC
GAGCGTGCGCCGTTCCGCCCGTGGTTCCTGATGTTCGTCCTGCTCGCCGTGGTCATCGGCCTGGGCCTGCTC
AGCCGCCTCCTCAGCTACCTGGCCTGA
Translation:
MSSRLSPEDQQKVEQYLASPLHQVERAPFRPWFLMFVLLAVVIGLGLLSRLLSYLA*
AnnotationID:5480GeneID:5475
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4537
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28091




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5475
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7872
                           PA4537_tr
                           translation of PA4537
                           56
                           99.99
                           99.99
                           0
                           279.0
     

     
     
196822
                           gb|AAG07925.1|AE004867_11
                           (AE004867) hypothetical protein PA4537 [Pseudomonas aeruginosa PAO1]
                           56
                           99.99
                           99.99
                           0
                           279.0
     

     






      

          
GC ORFID: 48477How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4537Glimmer Score: 

          
Start: 4505726Stop: 4505896

          
Length: 171


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4537 translation of PA4537Homolog Bit Score 112.0

          
Other Homologs:  t_PA4537 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGCCGACTGAGCCCCGAAGACCAGCAGAAGGTCGAGCAGTACCTCGCCTCGCCGCTGCACCAGGTC 
GAGCGTGCGCCGTTCCGCCCGTGGTTCCTGATGTTCGTCCTGCTCGCCGTGGTCATCGGCCTGGGCCTGCTC 
AGCCGCCTCCTCAGCTACCTGGCCTGA