ViewGene
Locus Name:
GeneID:
Location:

GeneID:5464
TrivialName: PA14_29580
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29580
PAO1 Ortholog Locus:
Sequence Length:174
Protein Length:57
Start: 2565058
Stop: 2565231
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by PA14_29575 (GeneID 7394). Homology: gb|AAG06056.1|AE004695_9 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 56/56 (100%), Positives = 56/56 (100%)
Sequence:
GTGGCGGTTCACTTCATCACCCAGGCCTGCGACAAGTTGTATAACGACGGCTCCTTCCTGCTGTCGCGGGAA
AAGGCTTATTACGAGTGTCTGCTGGAGAACCTGCCGGGGGTGGAGAACAACCTGGCGGCGCAGAAGATCAGG
AGCGCTTGCGAATCGAAGTCGCAGAATTGA
Translation:
MAVHFITQACDKLYNDGSFLLSREKAYYECLLENLPGVENNLAAQKIRSACESKSQN*
AnnotationID:5469GeneID:5464
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 18:06:56
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
PA14_29580 (GeneID 5464) replaced by PA14_29575 (GeneID 7394).


















    ReferenceID:15355




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5464
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7863
                           PA2668_tr
                           translation of PA2668
                           69
                           81.15
                           81.15
                           12
                           289.0
     

     
     
196738
                           gb|AAG06056.1|AE004695_9
                           (AE004695) hypothetical protein PA2668 [Pseudomonas aeruginosa PAO1]
                           69
                           81.15
                           81.15
                           12
                           289.0
     

     






      

          
GC ORFID: 48466How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2668Glimmer Score: 

          
Start: 2388868Stop: 2388695

          
Length: 174


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2668 translation of PA2668Homolog Bit Score 117.0

          
Other Homologs:  t_PA2668 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGGTTCACTTCATCACCCAGGCCTGCGACAAGTTGTATAACGACGGCTCCTTCCTGCTGTCGCGGGAA 
AAGGCTTATTACGAGTGTCTGCTGGAGAACCTGCCGGGGGTGGAGAACAACCTGGCGGCGCAGAAGATCAGG 
AGCGCTTGCGAATCGAAGTCGCAGAATTGA