ViewGene
Locus Name:
GeneID:
Location:

GeneID:5459
TrivialName: PA14_52470
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52470
PAO1 Ortholog Locus:
Sequence Length:483
Protein Length:160
Start: 4655878
Stop: 4656360
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID 7373 (PA14_52465).
Homology: gb|AAG04301.1|AE004525_9 (AE004525) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/148 (97%), Positives = 147/148 (99%)
Sequence:
CTGGCGTCCACCTGCGAGGCCGCTGCGGTATTCCGCTGCGAAGACGCCAGCGGCCATGTCAGCTTCACCCAA
CTCGGTTGCCCCGCCGGGCAGGCCGGCGAGACCGTCGTGGCGGACAACCCGCCGCCGGGAGGCAGGAGTGTC
ACGCCGATGGCCGAGACGAAGACGAAAAAGGCGTCCATCGGCCGGAAAAGCGTGCCGCTCGCGGTGATCGGA
GAAAGAGAAGATCGCTGCAGCAGACGCCTGGACGAGAAGGAACGCCGCAAGGCGATCGTGGAGCAGCGAATA
ATGGCGGGAATGACCCGCTCCGATGTGGAGCGGGCGCTGGGCAAGCCGGACCGGGTCAGCGGGAACAATGCG
GAGGTGCGTTATCAGTACAAGGCCGACAAGCGACGGGGAGCGAGAAGCGTGAGCTTCGATCAGGAGGGATGC
GTGAAGGGAAAGGGAAGGTACCGGGTGGAGCGAGTCGATCCCGGGAGCTAA
Translation:
MASTCEAAAVFRCEDASGHVSFTQLGCPAGQAGETVVADNPPPGGRSVTPMAETKTKKASIGRKSVPLAVIG
EREDRCSRRLDEKERRKAIVEQRIMAGMTRSDVERALGKPDRVSGNNAEVRYQYKADKRRGARSVSFDQEGC
VKGKGRYRVERVDPGS*
AnnotationID:5464GeneID:5459
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 09:09:13
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
GeneID=5459 is only 82.68% identical to PA0912 of PAO1 (and 84.57% identical to 
unknown in vivo-induced protein 131-14 of PAO1).
However, ORF prediction appears to be incorrect (predicted ORF truncated at both N- and C-termini).






 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID=5459 is only 82.68% identical to PA0912 of PAO1 (and 84.57% identical to 
unknown in vivo-induced protein 131-14 of PAO1).
However, ORF prediction appears to be incorrect (predicted ORF truncated at both N- and C-termini).


















    ReferenceID:15353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28061




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32012




  
Author/Investigator(s):
        Handfield M, Lehoux DE, Sanschagrin F, Mahan MJ, Woods DE, Levesque RC.






  
Title:
        In vivo-induced genes in Pseudomonas aeruginosa.





  
PubMed:
        10722644


MedLine:
        




    
Source:
Infect Immun. 2000 Apr;68(4):2359-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5459
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196730
                           gb|AAF63986.1|
                           (AF214672) unknown in vivo-induced protein 131-14 [Pseudomonas aeruginosa]
                           175
                           84.57
                           85.71
                           19
                           746.0
     

     
     
7859
                           PA0912_tr
                           translation of PA0912
                           179
                           82.68
                           83.79
                           19
                           750.0
     

     
     
196729
                           gb|AAG04301.1|AE004525_9
                           (AE004525) hypothetical protein PA0912 [Pseudomonas aeruginosa PAO1]
                           179
                           82.68
                           83.79
                           19
                           750.0
     

     
     
196731
                           gb|AAO55364.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           39.88
                           52.80
                           33
                           324.0
     

     






      

          
GC ORFID: 48461How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold8_revised_gene7608Glimmer Score: 

          
Start: 298029Stop: 297547

          
Length: 483


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold8_revised_gene7608 related to: gi|7576779|gb|AAF63986.1| (AF214672) unknown in vivo-induced protein 131-14 [Pseudomonas aeruginosa]Homolog Bit Score 119.0

          
Other Homologs:  t_PA0912 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGGCGTCCACCTGCGAGGCCGCTGCGGTATTCCGCTGCGAAGACGCCAGCGGCCATGTCAGCTTCACCCAA 
CTCGGTTGCCCCGCCGGGCAGGCCGGCGAGACCGTCGTGGCGGACAACCCGCCGCCGGGAGGCAGGAGTGTC 
ACGCCGATGGCCGAGACGAAGACGAAAAAGGCGTCCATCGGCCGGAAAAGCGTGCCGCTCGCGGTGATCGGA 
GAAAGAGAAGATCGCTGCAGCAGACGCCTGGACGAGAAGGAACGCCGCAAGGCGATCGTGGAGCAGCGAATA 
ATGGCGGGAATGACCCGCTCCGATGTGGAGCGGGCGCTGGGCAAGCCGGACCGGGTCAGCGGGAACAATGCG 
GAGGTGCGTTATCAGTACAAGGCCGACAAGCGACGGGGAGCGAGAAGCGTGAGCTTCGATCAGGAGGGATGC 
GTGAAGGGAAAGGGAAGGTACCGGGTGGAGCGAGTCGATCCCGGGAGCTAA