ViewGene
Locus Name:
GeneID:
Location:

GeneID:5450
TrivialName: PA14_66390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66390
PAO1 Ortholog Locus:
Sequence Length:621
Protein Length:206
Start: 5921500
Stop: 5920880
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
CTGCTCGGCGAGCAGCTCGCCGCGACGGTCGGCGTTGATCGCCTTGCCGCTTTCCTTGCCGGCCTTGAGCAG
CGAGCCGATCTCCAGGATTCGTGCCTGCATGCTGCTGATGCCGGCCTGGGCTCGTTCCGGGCGGGTCTCGGC
GGTGATCGACAGGCTGTTGGCCTCGCCCAGGGCCTTCTGCCACTCGGCCTGCTGGGTGGTGCGGTCGTTGAG
CAGCATCTCCAGGCGGGCCACGCTCTCGCCGCTGTAGCGCTCGCTGACCGGGCGTTCGCGGGTCTTCTTCAG
GCGCTCCAGTTCGCGCTGGTTATCCTCGATCTGCCGGGGCGCGTCGCTCAGACGCTTTTTCAGGTCTTCCAG
GCTCTGCAGCGCTTCGTCGCGCGCGGCGAGGAACTTGAGGGTCTGTTCGAGTCTGGCCTTGACGACCTTCTG
GTCGGCTTCGGCGAGCTTGCGTTCGGCCAGCTTGTCGAGGCTTTGCTGGACGGCTTCGGCCGAGGGCGGCTC
GGACTGGGCGAGGAGCGGCGGACTGGCAAGGCAGAGGCCGAGGAAAAGAGTAGCGATCAGGGAGCGGAGGGC
AGGCATGGTCGAGAAGAGACTCGAAGAAGGGTGAATGCAGGTTAG
Translation:
MLGEQLAATVGVDRLAAFLAGLEQRADLQDSCLHAADAGLGSFRAGLGGDRQAVGLAQGLLPLGLLGGAVVE
QHLQAGHALAAVALADRAFAGLLQALQFALVILDLPGRVAQTLFQVFQALQRFVARGEELEGLFESGLDDLL
VGFGELAFGQLVEALLDGFGRGRLGLGEERRTGKAEAEEKSSDQGAEGRHGREETRRRVNAG*
AnnotationID:5455GeneID:5450
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48452How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene336Glimmer Score: 

          
Start: 5185183Stop: 5184563

          
Length: 621


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3364Homolog Bit Score 121.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGCTCGGCGAGCAGCTCGCCGCGACGGTCGGCGTTGATCGCCTTGCCGCTTTCCTTGCCGGCCTTGAGCAG 
CGAGCCGATCTCCAGGATTCGTGCCTGCATGCTGCTGATGCCGGCCTGGGCTCGTTCCGGGCGGGTCTCGGC 
GGTGATCGACAGGCTGTTGGCCTCGCCCAGGGCCTTCTGCCACTCGGCCTGCTGGGTGGTGCGGTCGTTGAG 
CAGCATCTCCAGGCGGGCCACGCTCTCGCCGCTGTAGCGCTCGCTGACCGGGCGTTCGCGGGTCTTCTTCAG 
GCGCTCCAGTTCGCGCTGGTTATCCTCGATCTGCCGGGGCGCGTCGCTCAGACGCTTTTTCAGGTCTTCCAG 
GCTCTGCAGCGCTTCGTCGCGCGCGGCGAGGAACTTGAGGGTCTGTTCGAGTCTGGCCTTGACGACCTTCTG 
GTCGGCTTCGGCGAGCTTGCGTTCGGCCAGCTTGTCGAGGCTTTGCTGGACGGCTTCGGCCGAGGGCGGCTC 
GGACTGGGCGAGGAGCGGCGGACTGGCAAGGCAGAGGCCGAGGAAAAGAGTAGCGATCAGGGAGCGGAGGGC 
AGGCATGGTCGAGAAGAGACTCGAAGAAGGGTGAATGCAGGTTAG