ViewGene
Locus Name:
GeneID:
Location:

GeneID:545
TrivialName: PA14_61190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61190
PAO1 Ortholog Locus:PA4624
Sequence Length:1707
Protein Length:568
Start: 5458807
Stop: 5457101
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08012.1|AE004876_7 (AE004876) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 564/568 (99%), Positives = 568/568 (100%)
Sequence:
ATGAAACCTTCGCAATGGACGCTTCGCTGGGTGACGCTCTGTGGCTGCGGGATGCTGGCAGCTTCCGCCGCC
GCCGTGGAGTTGCCAGGGACTGTACAGCCATCCCAGCTCGATGAACGCTTCAAGCCCCGCAGCGAGCCGCAG
GCCAAGCCCGAGGCGCCGCTGGTGGTGCCCAAGCAGGTCGCGCCGCAAGGCAGCGAACAGATCCGCTTCGAA
CTGCGCGAGATACGCATCGAAGGCAACACCCGCTATGACAAGGCGGTGCTCGAGTCCTATTACCAGCATATG
CTCGGCAAGCAGGTGTCCCTGGCCGAACTGGTCGACCTGGCCAACCGCCTCACCGCCAAGTACCGCCAGGAC
GGCTATCTGTTGACCCAGGTAGTGGTGCCGGAGCAGAGCATCGAGGGCGGCAAGGTACGCCTGCAGGTGATC
GAGGGTTACCTCGAACACGTGCAGATCAAGGGAACCGTCGATGGGCCGCGGGTGCGGGTGGAGGAACTGCTC
GCGCCGCTGACCGAAAAACGTCCGCTGGATGCCGATACCCTGGAGCGCGGCCTGCTGCTGGTCGGCGACCTG
CCGGGGGTCAACGTGCAGAGCGTGCTCAGCCCGGGGCAGGCGCTGGGCTCGTCGAACCTCGACGTGGCCTTG
CAGCAGCAGCGATACGAAGGCTTCGTCAGCCTCGACAACCGCGGTTCGCACTACACCGACCCGACCACCCTG
GCCTTCGGTGCCACCGAGTTCTCCCGCCTGGGCTTCTACGAGCAGATCGACGTGCTCGGCGCGATCTCGCCG
TTCAGCGATGCCACCCGCTACATCCAGTTGCGCGGCACGTTGCCGCTGGGCGGCATGTTCGCCGGCGATACC
CTGCAGATCATGGGTTCCTATTCGAAGGTCAACCCGGACATCCCGGACTCGGTATTCCCCTTCGACAGCGTC
AGCAAGAGCACCGAAGGCAGCATTTCCTACAACCATCCCTTCATCCGCTCGCGCTCGCAGAACCTGAGCGGC
GGCCTGGCGTTGCAGTGGAAGGATACCGAGACCCGCCTGCGCGACTTCGCCAGCGACGCCTCGAACCCCGGT
CGTGACCATGTGCGGGTGTTCCAGCAACGCCTGACCTATGACTGGGTCGATCGCTGGATGGGCATCAACCTG
GCGGAGGTGCGCAACAACATCGGCCTGGACATGTGGGGCGCGACCAAGAAGGACGATGAACGTCGTTCCCGC
GAAGTGGCCGACGGACGTTTCGTCTATCTCAACGGCAACGTCGGGCGCCTGCAAGGGCTCGGCGGACCCTGG
TCGGTGTATGGCGAGTTGCAATGGCAGTACAGCTTCGACCCGCTGCTGCCGAGCGAGCGCTTCGGCGTCGGC
GGCAGCGGGATCGGTCGCGGCTTCGCCCCGGGCAACATCACCGGTGACCGTGGCTTCGCCCTGAAGCTCGAA
CCGCGCTATGGCCAGGCGGTGGGCTACAGCTGGCTGCGCAGCTACCAGGCCTACGCTTTCTACGACTGGGGC
AAGACCTACAACCTCGACGTGGACGATGACGAGCAGCAGAAGCTCGGCTCGATCGGTGCCGGGGTGCGCTTC
AACCTCACCGACCAGTTGTCGTTCAACCCGGAGATTGCCCGCCAGGTCATCGGCGAGCCAGCCGACCAGCGC
GATGGGAAGCGCGAGACGCGGGTCCTGTTCAACGTGGTGGCGCGCTTCTGA
Translation:
MKPSQWTLRWVTLCGCGMLAASAAAVELPGTVQPSQLDERFKPRSEPQAKPEAPLVVPKQVAPQGSEQIRFE
LREIRIEGNTRYDKAVLESYYQHMLGKQVSLAELVDLANRLTAKYRQDGYLLTQVVVPEQSIEGGKVRLQVI
EGYLEHVQIKGTVDGPRVRVEELLAPLTEKRPLDADTLERGLLLVGDLPGVNVQSVLSPGQALGSSNLDVAL
QQQRYEGFVSLDNRGSHYTDPTTLAFGATEFSRLGFYEQIDVLGAISPFSDATRYIQLRGTLPLGGMFAGDT
LQIMGSYSKVNPDIPDSVFPFDSVSKSTEGSISYNHPFIRSRSQNLSGGLALQWKDTETRLRDFASDASNPG
RDHVRVFQQRLTYDWVDRWMGINLAEVRNNIGLDMWGATKKDDERRSREVADGRFVYLNGNVGRLQGLGGPW
SVYGELQWQYSFDPLLPSERFGVGGSGIGRGFAPGNITGDRGFALKLEPRYGQAVGYSWLRSYQAYAFYDWG
KTYNLDVDDDEQQKLGSIGAGVRFNLTDQLSFNPEIARQVIGEPADQRDGKRETRVLFNVVARF*
AnnotationID:554GeneID:545
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 08:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin activation/secretion protein
Cell Localization:()
Synonyms:PA4624
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2831
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE42269.1| (BX640417) putative exported protein [Bordetella pertussis]
          Length = 570

 Score =  147 bits (370), Expect = 2e-34
 Identities = 141/538 (26%), Positives = 235/538 (43%), Gaps = 21/538 (3%)







 
Structural Features:
COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
CD-Length = 554 residues,  99.1% aligned
Score =  386 bits (992), Expect = 1e-107
Identities = 182/569 (31%), Positives = 259/569 (45%), Gaps = 27/569 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1093




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18235




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31599




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:545_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:545
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
945
                           PA4624_tr
                           translation of PA4624
                           568
                           99.29
                           99.99
                           0
                           2953.0
     

     
     
37826
                           gb|AAG08012.1|AE004876_7
                           (AE004876) hypothetical protein PA4624 [Pseudomonas aeruginosa PAO1]
                           568
                           99.29
                           99.99
                           0
                           2953.0
     

     






      

          
GC ORFID: 43547How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4624Glimmer Score: 

          
Start: 4722487Stop: 4720781

          
Length: 1707


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4624 translation of PA4624Homolog Bit Score 1142.0

          
Other Homologs:  t_PA4624 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCTTCGCAATGGACGCTTCGCTGGGTGACGCTCTGTGGCTGCGGGATGCTGGCAGCTTCCGCCGCC 
GCCGTGGAGTTGCCAGGGACTGTACAGCCATCCCAGCTCGATGAACGCTTCAAGCCCCGCAGCGAGCCGCAG 
GCCAAGCCCGAGGCGCCGCTGGTGGTGCCCAAGCAGGTCGCGCCGCAAGGCAGCGAACAGATCCGCTTCGAA 
CTGCGCGAGATACGCATCGAAGGCAACACCCGCTATGACAAGGCGGTGCTCGAGTCCTATTACCAGCATATG 
CTCGGCAAGCAGGTGTCCCTGGCCGAACTGGTCGACCTGGCCAACCGCCTCACCGCCAAGTACCGCCAGGAC 
GGCTATCTGTTGACCCAGGTAGTGGTGCCGGAGCAGAGCATCGAGGGCGGCAAGGTACGCCTGCAGGTGATC 
GAGGGTTACCTCGAACACGTGCAGATCAAGGGAACCGTCGATGGGCCGCGGGTGCGGGTGGAGGAACTGCTC 
GCGCCGCTGACCGAAAAACGTCCGCTGGATGCCGATACCCTGGAGCGCGGCCTGCTGCTGGTCGGCGACCTG 
CCGGGGGTCAACGTGCAGAGCGTGCTCAGCCCGGGGCAGGCGCTGGGCTCGTCGAACCTCGACGTGGCCTTG 
CAGCAGCAGCGATACGAAGGCTTCGTCAGCCTCGACAACCGCGGTTCGCACTACACCGACCCGACCACCCTG 
GCCTTCGGTGCCACCGAGTTCTCCCGCCTGGGCTTCTACGAGCAGATCGACGTGCTCGGCGCGATCTCGCCG 
TTCAGCGATGCCACCCGCTACATCCAGTTGCGCGGCACGTTGCCGCTGGGCGGCATGTTCGCCGGCGATACC 
CTGCAGATCATGGGTTCCTATTCGAAGGTCAACCCGGACATCCCGGACTCGGTATTCCCCTTCGACAGCGTC 
AGCAAGAGCACCGAAGGCAGCATTTCCTACAACCATCCCTTCATCCGCTCGCGCTCGCAGAACCTGAGCGGC 
GGCCTGGCGTTGCAGTGGAAGGATACCGAGACCCGCCTGCGCGACTTCGCCAGCGACGCCTCGAACCCCGGT 
CGTGACCATGTGCGGGTGTTCCAGCAACGCCTGACCTATGACTGGGTCGATCGCTGGATGGGCATCAACCTG 
GCGGAGGTGCGCAACAACATCGGCCTGGACATGTGGGGCGCGACCAAGAAGGACGATGAACGTCGTTCCCGC 
GAAGTGGCCGACGGACGTTTCGTCTATCTCAACGGCAACGTCGGGCGCCTGCAAGGGCTCGGCGGACCCTGG 
TCGGTGTATGGCGAGTTGCAATGGCAGTACAGCTTCGACCCGCTGCTGCCGAGCGAGCGCTTCGGCGTCGGC 
GGCAGCGGGATCGGTCGCGGCTTCGCCCCGGGCAACATCACCGGTGACCGTGGCTTCGCCCTGAAGCTCGAA 
CCGCGCTATGGCCAGGCGGTGGGCTACAGCTGGCTGCGCAGCTACCAGGCCTACGCTTTCTACGACTGGGGC 
AAGACCTACAACCTCGACGTGGACGATGACGAGCAGCAGAAGCTCGGCTCGATCGGTGCCGGGGTGCGCTTC 
AACCTCACCGACCAGTTGTCGTTCAACCCGGAGATTGCCCGCCAGGTCATCGGCGAGCCAGCCGACCAGCGC 
GATGGGAAGCGCGAGACGCGGGTCCTGTTCAACGTGGTGGCGCGCTTCTGA