ViewGene
Locus Name:
GeneID:
Location:

GeneID:5441
TrivialName: PA14_58140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58140
PAO1 Ortholog Locus:
Sequence Length:390
Protein Length:129
Start: 5175555
Stop: 5175944
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC38798.1| (AL939110) hypothetical protein SCI39.10c [Streptomyces coelicolor A3(2)]
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Sequence:
TTGGGTGAAGGGGTTCGGATCGACGCCGATCAGCTCGCTGACCAGTACCTTGTCGTCGACCAGCGCGGCGGA
ATTGAGCAGCTCGCGCAGGCGCACGTTCTGCTCGGTGAGCGCGGCGAGTTTCTGCACCCGGCGCTGCATCAG
CAGGGACTCGGCCTTGAGGCGTTCGTTCTCGGCGATCAGCTCGCTACGGCTGCTGAACTGGTCGCGCACGCC
TTCCCAGGCGCGCACCGGCATTTCCGCCAGGCCGTAGAAAGGCGTGAGCACCATCCCCAGCTTGCTGCGGAC
GGGCTCCAGATAGTCGAACCGGGCGTCCACCACCATCAGGCTGACCGACAGCACGGCCAGCACCAACAGGCG
AACGCCCAGCGACGGGCCTTTGGAGAATAG
Translation:
MGEGVRIDADQLADQYLVVDQRGGIEQLAQAHVLLGERGEFLHPALHQQGLGLEAFVLGDQLATAAELVAHA
FPGAHRHFRQAVERREHHPQLAADGLQIVEPGVHHHQADRQHGQHQQANAQRRAFGE*
AnnotationID:5446GeneID:5441
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 14:02:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15346




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48443How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold4_revised_gene556Glimmer Score: 

          
Start: 4439234Stop: 4439623

          
Length: 390


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold4_revised_gene5562Homolog Bit Score 124.0

          
Other Homologs:  

          
GC ORF Sequence

           
TTGGGTGAAGGGGTTCGGATCGACGCCGATCAGCTCGCTGACCAGTACCTTGTCGTCGACCAGCGCGGCGGA 
ATTGAGCAGCTCGCGCAGGCGCACGTTCTGCTCGGTGAGCGCGGCGAGTTTCTGCACCCGGCGCTGCATCAG 
CAGGGACTCGGCCTTGAGGCGTTCGTTCTCGGCGATCAGCTCGCTACGGCTGCTGAACTGGTCGCGCACGCC 
TTCCCAGGCGCGCACCGGCATTTCCGCCAGGCCGTAGAAAGGCGTGAGCACCATCCCCAGCTTGCTGCGGAC 
GGGCTCCAGATAGTCGAACCGGGCGTCCACCACCATCAGGCTGACCGACAGCACGGCCAGCACCAACAGGCG 
AACGCCCAGCGACGGGCCTTTGGAGAATAG