ViewGene
Locus Name:
GeneID:
Location:

GeneID:5389
TrivialName: PA14_49000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49000
PAO1 Ortholog Locus:PA0717
Sequence Length:213
Protein Length:70
Start: 4352941
Stop: 4352729
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04106.1|AE004507_5 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 67/70 (95%), Positives = 69/70 (98%)
Sequence:
ATGCGCTACCTCGTAGAGATGTGCACCTTCCACGGCCCGACCCGGCAACGTCGCTGGCATCGCGTCCATCAG
GGCATTTCCCGCGTGGAATGCCAACGCTGGGTCGAAGAGTTGGTGGCTATCTTCCCGACTGAAGAAGAAGCT
CGCCGCTCCTTCGGCCTGACCCGCGAACGCGCTCGGCAGGTGTACCGCATCCGTGGGGTGAGGGCATGA
Translation:
MRYLVEMCTFHGPTRQRRWHRVHQGISRVECQRWVEELVAIFPTEEEARRSFGLTRERARQVYRIRGVRA*
AnnotationID:5394GeneID:5389
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 14:02:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0717
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG04106.1|AE004507_5 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1];
100% similar to hypothetical protein 71 [Bacteriophage Pf1] 







 
Structural Features:






   
Genomic Context:
Cluster of genes from Pf1






   
Comment:


















    ReferenceID:10776




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27925




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5389
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7782
                           PA0717_tr
                           translation of PA0717
                           70
                           95.71
                           98.57
                           0
                           362.0
     

     
     
196368
                           gb|AAG04106.1|AE004507_5
                           (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
                           70
                           95.71
                           98.57
                           0
                           362.0
     

     






      

          
GC ORFID: 48391How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0717Glimmer Score: 

          
Start: 600967Stop: 601179

          
Length: 213


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0717 translation of PA0717Homolog Bit Score 144.0

          
Other Homologs:  t_PA0717 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTACCTCGTAGAGATGTGCACCTTCCACGGCCCGACCCGGCAACGTCGCTGGCATCGCGTCCATCAG 
GGCATTTCCCGCGTGGAATGCCAACGCTGGGTCGAAGAGTTGGTGGCTATCTTCCCGACTGAAGAAGAAGCT 
CGCCGCTCCTTCGGCCTGACCCGCGAACGCGCTCGGCAGGTGTACCGCATCCGTGGGGTGAGGGCATGA