ViewGene
Locus Name:
GeneID:
Location:

GeneID:5381
TrivialName: PA14_33660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33660
PAO1 Ortholog Locus:
Sequence Length:771
Protein Length:256
Start: 2981339
Stop: 2980569
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
CTGGAACCGCGCCAGGTCGCCGGTACGGTACAGCCGCTCGCCGGCGCCGCCGGGGAACGGGTTCGGCACGAA
GCGGGTGGCACTCAACCCGGCCCGCCTCAGGTAGCCGCGTGCCAGCCCGGCGCGACCGATGTACAGCTCGCC
CACCGCGCCGCGCGGCACCGGGTTCAGGTCACGGTCGAGGATGTACCAGGACAGGTCCGGGATGGTCCCGCC
AATCGGACTGACCAGGCCACCTTCCAGGTCGGCCTCGCTCACCGGACGGTAGGTTACGTGCACCGTGGTCTC
GGTGATGCCGTACATGTTCACCAGTTGCGGCTGGCGATCGCCGAAGCGCTGGAACCACGGCCGCAGGCTCTG
CAGATCCAGCGCCTCGCCACCGAAGATCACGTAGCGCAGCGCCGGCTGCTGCGTCGCCATGTCGGCGGAACA
GGCCACCGCCATCAGTTGCTTGAACGCCGACGGCGTCTGGTTGAGCACCGTCACGCCTTCGCGGCACAGCAG
ACGGTAGAAGTCTTCCGGCGAACGGCTCACCCATTGCGGCACGATCACCAGGCGCCCGCCATAGAGCAGCGC
GCCGAAGATTTCCCAGACCGAGAAATCGAAGGCGTAGGAATGGAACAATGTCCACACGTCCCGCTCGTCGAA
GCCGAACCAGGCCTCGGTGGCGCTGAACAGGCGCAGCGCGTTGCGGTGGGTGAGCAATGTGCCCTTGGGCTT
GCCGGTCGAGCCCGAGGTATAGATCACGTAGGCCAGGTTGTCCGCCGATAG
Translation:
MEPRQVAGTVQPLAGAAGERVRHEAGGTQPGPPQVAACQPGATDVQLAHRAARHRVQVTVEDVPGQVRDGPA
NRTDQATFQVGLAHRTVGYVHRGLGDAVHVHQLRLAIAEALEPRPQALQIQRLATEDHVAQRRLLRRHVGGT
GHRHQLLERRRRLVEHRHAFAAQQTVEVFRRTAHPLRHDHQAPAIEQRAEDFPDREIEGVGMEQCPHVPLVE
AEPGLGGAEQAQRVAVGEQCALGLAGRARGIDHVGQVVRR*
AnnotationID:5386GeneID:5381
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15328




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27909




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48383How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene148Glimmer Score: 

          
Start: 1972577Stop: 1973347

          
Length: 771


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene1489Homolog Bit Score 147.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGAACCGCGCCAGGTCGCCGGTACGGTACAGCCGCTCGCCGGCGCCGCCGGGGAACGGGTTCGGCACGAA 
GCGGGTGGCACTCAACCCGGCCCGCCTCAGGTAGCCGCGTGCCAGCCCGGCGCGACCGATGTACAGCTCGCC 
CACCGCGCCGCGCGGCACCGGGTTCAGGTCACGGTCGAGGATGTACCAGGACAGGTCCGGGATGGTCCCGCC 
AATCGGACTGACCAGGCCACCTTCCAGGTCGGCCTCGCTCACCGGACGGTAGGTTACGTGCACCGTGGTCTC 
GGTGATGCCGTACATGTTCACCAGTTGCGGCTGGCGATCGCCGAAGCGCTGGAACCACGGCCGCAGGCTCTG 
CAGATCCAGCGCCTCGCCACCGAAGATCACGTAGCGCAGCGCCGGCTGCTGCGTCGCCATGTCGGCGGAACA 
GGCCACCGCCATCAGTTGCTTGAACGCCGACGGCGTCTGGTTGAGCACCGTCACGCCTTCGCGGCACAGCAG 
ACGGTAGAAGTCTTCCGGCGAACGGCTCACCCATTGCGGCACGATCACCAGGCGCCCGCCATAGAGCAGCGC 
GCCGAAGATTTCCCAGACCGAGAAATCGAAGGCGTAGGAATGGAACAATGTCCACACGTCCCGCTCGTCGAA 
GCCGAACCAGGCCTCGGTGGCGCTGAACAGGCGCAGCGCGTTGCGGTGGGTGAGCAATGTGCCCTTGGGCTT 
GCCGGTCGAGCCCGAGGTATAGATCACGTAGGCCAGGTTGTCCGCCGATAG