ViewGene

Locus Name:
GeneID:
Location:

GeneID:5361
TrivialName: PA14_20940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20940
PAO1 Ortholog Locus:PA3334
Sequence Length:240
Protein Length:79
Start: 1803532
Stop: 1803293
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06722.1|AE004755_9 (AE004755) probable acyl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGCCCAACGACATGGAAGACCATCTCCTCACCGTGCTCAGCGTCGCCAGCGGCGTGCCGAAGGAGGAAATC
AGCCGGGACAGCAGGATGGAAGACCTGGCTTTCGATTCGCTGGTGGTCAGCGAGCTGTCGCTGAAGCTGCGC
AAGGAGTTCGGCGTCACCGGGGTCGACGACGAACTCGACCTGCTGGAAACGGTGGACGAACTGTTCCAGCTG
GTCGAGAAGCACCGCGCCGCCTGA
Translation:
MPNDMEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQL
VEKHRAA*
AnnotationID:5366GeneID:5361
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative acyl carrier protein
Cell Localization:()
Synonyms:PA3334
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0236
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD71509.1| (BX294133) acyl carrier protein precursor [Pirellula sp.]
          Length = 81

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Structural Features:
COG0236, AcpP, Acyl carrier protein 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 80 residues,  98.8% aligned
Score = 38.0 bits (88), Expect = 2e-04
Genomic Context:
Comment:
ReferenceID:10722
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27869
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32230
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5361_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5361

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7756 PA3334_tr translation of PA3334 79 99.99 99.99 0 387.0
196166 gb|AAG06722.1|AE004755_9 (AE004755) probable acyl carrier protein [Pseudomonas aeruginosa PAO1] 79 99.99 99.99 0 387.0
GC ORFID: 48363How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3334Glimmer Score:
Start: 3150400Stop: 3150639
Length: 240
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3334 translation of PA3334Homolog Bit Score 153.0
Other Homologs: t_PA3334 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAACGACATGGAAGACCATCTCCTCACCGTGCTCAGCGTCGCCAGCGGCGTGCCGAAGGAGGAAATC
AGCCGGGACAGCAGGATGGAAGACCTGGCTTTCGATTCGCTGGTGGTCAGCGAGCTGTCGCTGAAGCTGCGC
AAGGAGTTCGGCGTCACCGGGGTCGACGACGAACTCGACCTGCTGGAAACGGTGGACGAACTGTTCCAGCTG
GTCGAGAAGCACCGCGCCGCCTGA