ViewGene
Locus Name:
GeneID:
Location:

GeneID:5361
TrivialName: PA14_20940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20940
PAO1 Ortholog Locus:PA3334
Sequence Length:240
Protein Length:79
Start: 1803532
Stop: 1803293
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06722.1|AE004755_9 (AE004755) probable acyl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGCCCAACGACATGGAAGACCATCTCCTCACCGTGCTCAGCGTCGCCAGCGGCGTGCCGAAGGAGGAAATC
AGCCGGGACAGCAGGATGGAAGACCTGGCTTTCGATTCGCTGGTGGTCAGCGAGCTGTCGCTGAAGCTGCGC
AAGGAGTTCGGCGTCACCGGGGTCGACGACGAACTCGACCTGCTGGAAACGGTGGACGAACTGTTCCAGCTG
GTCGAGAAGCACCGCGCCGCCTGA
Translation:
MPNDMEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQL
VEKHRAA*
AnnotationID:5366GeneID:5361
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative acyl carrier protein
Cell Localization:()
Synonyms:PA3334
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0236
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD71509.1| (BX294133) acyl carrier protein precursor [Pirellula sp.]
          Length = 81

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)






 
Structural Features:
COG0236, AcpP, Acyl carrier protein 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 80 residues,  98.8% aligned
Score = 38.0 bits (88), Expect = 2e-04






   
Genomic Context:






   
Comment:


















    ReferenceID:10722




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27869




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32230




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7756
                           PA3334_tr
                           translation of PA3334
                           79
                           99.99
                           99.99
                           0
                           387.0
     

     
     
196166
                           gb|AAG06722.1|AE004755_9
                           (AE004755) probable acyl carrier protein [Pseudomonas aeruginosa PAO1]
                           79
                           99.99
                           99.99
                           0
                           387.0
     

     






      

          
GC ORFID: 48363How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3334Glimmer Score: 

          
Start: 3150400Stop: 3150639

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3334 translation of PA3334Homolog Bit Score 153.0

          
Other Homologs:  t_PA3334 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACGACATGGAAGACCATCTCCTCACCGTGCTCAGCGTCGCCAGCGGCGTGCCGAAGGAGGAAATC 
AGCCGGGACAGCAGGATGGAAGACCTGGCTTTCGATTCGCTGGTGGTCAGCGAGCTGTCGCTGAAGCTGCGC 
AAGGAGTTCGGCGTCACCGGGGTCGACGACGAACTCGACCTGCTGGAAACGGTGGACGAACTGTTCCAGCTG 
GTCGAGAAGCACCGCGCCGCCTGA