ViewGene
Locus Name:
GeneID:
Location:

GeneID:5342
TrivialName: PA14_08700
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08700
PAO1 Ortholog Locus:
Sequence Length:312
Protein Length:103
Start: 742739
Stop: 743049
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/01/06. Replaced by PA14_08695 (GeneID 7378). Homology: gb|AAG07664.1|AE004843_6 (AE004843) secretion protein SecE [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
TTGCCGTTCTGGTTGTGGTTGCCGTTGTGGGCAattcAGTACTTTTCGGCTCAACCAATCCTGTATCGCGTT
CTCGGTATTCTCGTTCTGGCGGTGATCGCTGCTTTCCTGGCTCTGCAAACGGCCAAGGGGCAGGCCTTCTTT
AGTCTTGCTAAGGAAGCGCGCGTCGAGATTCGCAAGGTCGTATGGCCGAGTCGTCAAGAAACAACTCAGACC
ACGCTGATCGTGGTCGCGGTAGTGCTGGTAATGGCGCTGCTGCTGTGGGGGCTCGATTCCCTGCTGGGTTGG
TTGGTTTCCATGATTGTAGGTTAA
Translation:
MPFWLWLPLWAIQYFSAQPILYRVLGILVLAVIAAFLALQTAKGQAFFSLAKEARVEIRKVVWPSRQETTQT
TLIVVAVVLVMALLLWGLDSLLGWLVSMIVG*
AnnotationID:5347GeneID:5342
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 16:04:36
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:preprotein translocase, SecE subunit
Functional Category Confidence Code:5
COGs:COG0690
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO54155.1| (AE016858) preprotein translocase, SecE subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 122

 Score =  152 bits (385), Expect = 3e-37
 Identities = 77/91 (84%), Positives = 84/91 (92%)

>gb|AAN66071.1|AE016236_5 (AE016775) preprotein translocase, SecE subunit [Pseudomonas putida
           KT2440]
          Length = 122

 Score =  150 bits (380), Expect = 1e-36
 Identities = 75/91 (82%), Positives = 84/91 (92%)

>gb|AAM84067.1|AE013648_9 (AE013648) preprotein translocase [Yersinia pestis KIM]
          Length = 132

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 47/90 (52%), Positives = 63/90 (70%)








 
Structural Features:
COG0690, SecE, Preprotein translocase subunit SecE 
[Intracellular trafficking and secretion]
CD-Length = 73 residues,  97.3% aligned
Score = 61.2 bits (148), Expect = 2e-11
Identities = 35/71 (49%), Positives = 48/71 (67%)








   
Genomic Context:






   
Comment:
Inactivated 2/01/06. Replaced by PA14_08695 (GeneID 7378).


















    ReferenceID:15316




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27832




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36641




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5342_cdd.html


    		




 
URL:

















    ReferenceID:36784




  
Author/Investigator(s):
        Downing WL, Sullivan SL, Gottesman ME, Dennis PP.





  
Title:
        Sequence and transcriptional pattern of the essential Escherichia coli secE-nusG operon.




  
PubMed:
        2137819


MedLine:
        




    
Source:
J Bacteriol. 1990 Mar;172(3):1621-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2137819

















    ReferenceID:36787




  
Author/Investigator(s):
        Schatz PJ, Riggs PD, Jacq A, Fath MJ, Beckwith J.





  
Title:
        The secE gene encodes an integral membrane protein required for protein export in Escherichia coli.




  
PubMed:
        2673920


MedLine:
        




    
Source:
Genes Dev. 1989 Jul;3(7):1035-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=89378734&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5342
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7738
                           PA4276_tr
                           translation of PA4276
                           122
                           77.04
                           79.50
                           19
                           440.0
     

     
     
196058
                           gb|AAG07664.1|AE004843_6
                           (AE004843) secretion protein SecE [Pseudomonas aeruginosa PAO1]
                           122
                           77.04
                           79.50
                           19
                           440.0
     

     
     
196059
                           gb|AAO54155.1|
                           (AE016858) preprotein translocase, SecE subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           65.57
                           73.77
                           19
                           385.0
     

     
     
196060
                           gb|AAN66071.1|AE016236_5
                           (AE016775) preprotein translocase, SecE subunit [Pseudomonas putida KT2440]
                           122
                           63.93
                           73.77
                           19
                           382.0
     

     






      

          
GC ORFID: 48344How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene79Glimmer Score: 

          
Start: 4211201Stop: 4210890

          
Length: 312


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene79 related to: gi|15599472|ref|NP_252966.1| (NC_002516) secretion protein SecE [Pseudomonas aeruginosa] pir||E83111 secretion protein SecE PA4276 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07664.1|AE004843_6Homolog Bit Score 158.0

          
Other Homologs:  t_PA4276 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCGTTCTGGTTGTGGTTGCCGTTGTGGGCAattcAGTACTTTTCGGCTCAACCAATCCTGTATCGCGTT 
CTCGGTATTCTCGTTCTGGCGGTGATCGCTGCTTTCCTGGCTCTGCAAACGGCCAAGGGGCAGGCCTTCTTT 
AGTCTTGCTAAGGAAGCGCGCGTCGAGATTCGCAAGGTCGTATGGCCGAGTCGTCAAGAAACAACTCAGACC 
ACGCTGATCGTGGTCGCGGTAGTGCTGGTAATGGCGCTGCTGCTGTGGGGGCTCGATTCCCTGCTGGGTTGG 
TTGGTTTCCATGATTGTAGGTTAA