ViewGene
Locus Name:
GeneID:
Location:

GeneID:5319
TrivialName: PA14_73300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73300
PAO1 Ortholog Locus:PA5559
Sequence Length:258
Protein Length:85
Start: 6526748
Stop: 6526491
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08944.1|AE004967_15 (AE004967) atp synthase C chain [Pseudomonas aeruginosa PAO1]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGGAAACTGTAGTTGGACTGACTGCTATCGCCGTTGCTCTGCTGATTGGCCTGGGTGCCCTGGGTACCGCC
ATCGGTTTCGGTCTGCTGGGTGGCAAGTTCCTGGAAGGCGCAGCTCGTCAGCCTGAAATGGTTCCGATGCTG
CAGGTGAAAATGTTCATCGTCGCCGGCCTGCTGGACGCCGTGACCATGATCGGTGTGGGTATCGCCCTGTTC
TTCACCTTCGCGAATCCCTTCGTTGGTCAAATCGCCGGCTAA
Translation:
METVVGLTAIAVALLIGLGALGTAIGFGLLGGKFLEGAARQPEMVPMLQVKMFIVAGLLDAVTMIGVGIALF
FTFANPFVGQIAG*
AnnotationID:5324GeneID:5319
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:31
Gene Name:atpE
Confidence Code:2
GeneProduct:atp synthase C chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F0, C subunit
Functional Category Confidence Code:5
COGs:COG0636,pfam00137
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70982.1|AE016742_11 (AE016794) ATP synthase F0, C subunit [Pseudomonas putida KT2440]
          Length = 85

 Score =  164 bits (414), Expect = 1e-40
 Identities = 85/85 (100%), Positives = 85/85 (100%)

>gb|AAN57711.1|AE015907_9 (AE015907) ATP synthase F0, C subunit [Shewanella oneidensis
          MR-1]
          Length = 83

 Score =  139 bits (351), Expect = 3e-33
 Identities = 70/78 (89%), Positives = 74/78 (94%)

>gb|AAO09504.1|AE016800_109 (AE016800) ATP synthase F0, C subunit [Vibrio vulnificus CMCP6]
          Length = 85

 Score =  137 bits (344), Expect = 2e-32
 Identities = 67/85 (78%), Positives = 77/85 (90%)






 
Structural Features:
COG0636, AtpE, F0F1-type ATP synthase, 
subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 
[Energy production and conversion]
CD-Length = 79 residues,  98.7% aligned
Score = 41.3 bits (97), Expect = 3e-05
Identities = 34/78 (43%), Positives = 43/78 (55%)

pfam00137, ATP-synt_C, ATP synthase subunit C.
CD-Length = 70 residues, 100.0% aligned
Score = 41.7 bits (98), Expect = 2e-05
Identities = 32/70 (45%), Positives = 41/70 (58%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10638




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27785




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33342




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5319_cdd.html


    		




 
URL:

















    ReferenceID:35554




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35569




  
Author/Investigator(s):
        Curtis SE.





  
Title:
        Genes encoding the beta and epsilon subunits of the proton-translocating ATPase from Anabaena sp. strain PCC 7120.




  
PubMed:
        2878921


MedLine:
        




    
Source:
J Bacteriol. 1987 Jan;169(1):80-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2878921

















    ReferenceID:35570




  
Author/Investigator(s):
        Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K.





  
Title:
        The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.




  
PubMed:
        6278247


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(1):33-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6278247









           
Homologs By Global Alignment 

           

       



     
Gene ID:5319
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7719
                           PA5559_tr
                           translation of PA5559
                           85
                           99.99
                           99.99
                           0
                           414.0
     

     
     
195968
                           gb|AAG08944.1|AE004967_15
                           (AE004967) atp synthase C chain [Pseudomonas aeruginosa PAO1]
                           85
                           99.99
                           99.99
                           0
                           414.0
     

     
     
195969
                           gb|AAN70982.1|AE016742_11
                           (AE016794) ATP synthase F0, C subunit [Pseudomonas putida KT2440]
                           85
                           99.99
                           99.99
                           0
                           414.0
     

     
     
195970
                           gb|AAO59017.1|
                           (AE016876) ATP synthase F0, C subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           85
                           98.82
                           99.99
                           0
                           412.0
     

     
     
195971
                           gb|AAN57711.1|AE015907_9
                           (AE015907) ATP synthase F0, C subunit [Shewanella oneidensis MR-1]
                           85
                           82.35
                           88.23
                           2
                           350.0
     

     






      

          
GC ORFID: 48321How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5559Glimmer Score: 

          
Start: 5790437Stop: 5790180

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5559 translation of PA5559Homolog Bit Score 164.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4127 (ORF: BLASTX 163.0), t_PA5559 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACTGTAGTTGGACTGACTGCTATCGCCGTTGCTCTGCTGATTGGCCTGGGTGCCCTGGGTACCGCC 
ATCGGTTTCGGTCTGCTGGGTGGCAAGTTCCTGGAAGGCGCAGCTCGTCAGCCTGAAATGGTTCCGATGCTG 
CAGGTGAAAATGTTCATCGTCGCCGGCCTGCTGGACGCCGTGACCATGATCGGTGTGGGTATCGCCCTGTTC 
TTCACCTTCGCGAATCCCTTCGTTGGTCAAATCGCCGGCTAA