ViewGene
Locus Name:
GeneID:
Location:

GeneID:5315
TrivialName: PA14_15970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15970
PAO1 Ortholog Locus:PA3745
Sequence Length:252
Protein Length:83
Start: 1361045
Stop: 1361296
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07132.1|AE004793_9 (AE004793) 30S ribosomal protein S16 [Pseudomonas aeruginosa PAO1]
Identities = 82/83 (98%), Positives = 82/83 (98%)
Sequence:
ATGGTAACCATCCGTCTTGCTCGTGGCGGCTCCAAAAAGCGCCCCTTCTACCACCTGACCGTGACCAACAGC
CGCAATGCGCGCGATGGTCGCTTCGTCGAGCGCATCGGTTTCTTCAACCCGGTTGCGACTGGTGGCGAAGTG
CGTCTGTCCGTCGACCAGGAGCGTGCTACCTACTGGCTCGCCCAGGGTGCACAGCCGTCTGAGCGCGTTGCT
CAGCTGCTCAAGGACGCTGCCAAGGCAAACGCCTAA
Translation:
MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERIGFFNPVATGGEVRLSVDQERATYWLAQGAQPSERVA
QLLKDAAKANA*
AnnotationID:5320GeneID:5315
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 09:09:36
Gene Name:rpsP
Confidence Code:2
GeneProduct:30S ribosomal protein S16
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0228,pfam00886
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67084.1|AE016337_7 (AE016779) ribosomal protein S16 [Pseudomonas putida KT2440]
          Length = 109

 Score =  151 bits (382), Expect = 7e-37
 Identities = 73/83 (87%), Positives = 79/83 (95%)








 
Structural Features:
COG0228, RpsP, Ribosomal protein S16 
[Translation, ribosomal structure and biogenesis]
CD-Length = 87 residues,  92.0% aligned
Score =  111 bits (280), Expect = 2e-26
Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

pfam00886, Ribosomal_S16, Ribosomal protein S16.
CD-Length = 59 residues, 100.0% aligned
Score = 74.5 bits (183), Expect = 4e-15
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10630




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27777




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31813




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5315_cdd.html


    		




 
URL:

















    ReferenceID:34266




  
Author/Investigator(s):
        Bystrom AS, Hjalmarsson KJ, Wikstrom PM, Bjork GR.





  
Title:
        The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA(m1G)methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide.




  
PubMed:
        6357787


MedLine:
        




    
Source:
EMBO J. 1983;2(6):899-905.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6357787









           
Homologs By Global Alignment 

           

       



     
Gene ID:5315
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7715
                           PA3745_tr
                           translation of PA3745
                           83
                           98.79
                           98.79
                           0
                           418.0
     

     
     
195888
                           gb|AAG07132.1|AE004793_9
                           (AE004793) 30S ribosomal protein S16 [Pseudomonas aeruginosa PAO1]
                           83
                           98.79
                           98.79
                           0
                           418.0
     

     
     
195890
                           gb|AAO54994.1|
                           (AE016861) ribosomal protein S16 [Pseudomonas syringae pv. tomato str. DC3000]
                           85
                           71.76
                           81.17
                           2
                           308.0
     

     
     
195889
                           gb|AAN67084.1|AE016337_7
                           (AE016779) ribosomal protein S16 [Pseudomonas putida KT2440]
                           109
                           66.97
                           72.47
                           26
                           382.0
     

     
     
195892
                           gb|AAN54422.1|AE015579_11
                           (AE015579) ribosomal protein S16 [Shewanella oneidensis MR-1]
                           83
                           63.85
                           80.72
                           1
                           272.0
     

     






      

          
GC ORFID: 48317How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3745Glimmer Score: 

          
Start: 3592892Stop: 3592641

          
Length: 252


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3745 translation of PA3745Homolog Bit Score 165.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4558 (ORF: BLASTX 122.0), t_PA3745 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTAACCATCCGTCTTGCTCGTGGCGGCTCCAAAAAGCGCCCCTTCTACCACCTGACCGTGACCAACAGC 
CGCAATGCGCGCGATGGTCGCTTCGTCGAGCGCATCGGTTTCTTCAACCCGGTTGCGACTGGTGGCGAAGTG 
CGTCTGTCCGTCGACCAGGAGCGTGCTACCTACTGGCTCGCCCAGGGTGCACAGCCGTCTGAGCGCGTTGCT 
CAGCTGCTCAAGGACGCTGCCAAGGCAAACGCCTAA