ViewGene
Locus Name:
GeneID:
Location:

GeneID:5271
TrivialName: PA14_67730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67730
PAO1 Ortholog Locus:
Sequence Length:468
Protein Length:155
Start: 6048823
Stop: 6049290
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN82867.1|AE016768_285 (AE016768) Hypothetical protein [Escherichia coli CFT073]
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Sequence:
CTGGGCGTAGAGGGCGTCGAAGTTCACCGGCGACAGCATCAGCGCCGGGAACGAACCGCGTACCACCAGGTT
GTCCAGGGCTTCGCGAGCGTACGGGAAGAGGATGTTCGGGCAGAACGCGCCGAGGGTATGGCTCATGCTCGA
CGGATCGAGGTTCTTGATCAGGAAGATGCCGGCCTGCTGCACTTCGGCGATGAAGGCAGTGGTGTCCTCGCC
GTTCTTCACGGTCACCGATACGGTCAGGACCACTTCGTAGAAGTCGCCGTCCAGCTGCTTCTGGCGAGTGTT
CAGGTCCAGGCTGATGGACGGGTTCCATTCCTGGCGGAAGATTTCCGGGGACTTCGGCGACTCGAACGACAG
GTCGCGCAGGTAGATGCGCTGCAGGGAGAACTGGGGTTGCTGCTCGTCGGCAGCGCCGTTGGTAGCTTGCTC
GGTCATTTTCGGGCCTTCCCTTGGGTCAATTCATGA
Translation:
MGVEGVEVHRRQHQRRERTAYHQVVQGFASVREEDVRAERAEGMAHARRIEVLDQEDAGLLHFGDEGSGVLA
VLHGHRYGQDHFVEVAVQLLLASVQVQADGRVPFLAEDFRGLRRLERQVAQVDALQGELGLLLVGSAVGSLL
GHFRAFPWVNS*
AnnotationID:5276GeneID:5271
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15288




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27688




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48273How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold6_revised_gene6928Glimmer Score: 

          
Start: 5312508Stop: 5312975

          
Length: 468


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold6_revised_gene6928 related to: gi|141591|sp|P15041|YZSB_ECOLI VERY HYPOTHETICAL 17.7 KD PROTEIN IN SECB REGION pir||QQEC17 hypothetical 17.7K protein (secB region) - Escherichia coli gb|AAA83908.1| (M24489) ORF; putative [EscherichiaHomolog Bit Score 174.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGGCGTAGAGGGCGTCGAAGTTCACCGGCGACAGCATCAGCGCCGGGAACGAACCGCGTACCACCAGGTT 
GTCCAGGGCTTCGCGAGCGTACGGGAAGAGGATGTTCGGGCAGAACGCGCCGAGGGTATGGCTCATGCTCGA 
CGGATCGAGGTTCTTGATCAGGAAGATGCCGGCCTGCTGCACTTCGGCGATGAAGGCAGTGGTGTCCTCGCC 
GTTCTTCACGGTCACCGATACGGTCAGGACCACTTCGTAGAAGTCGCCGTCCAGCTGCTTCTGGCGAGTGTT 
CAGGTCCAGGCTGATGGACGGGTTCCATTCCTGGCGGAAGATTTCCGGGGACTTCGGCGACTCGAACGACAG 
GTCGCGCAGGTAGATGCGCTGCAGGGAGAACTGGGGTTGCTGCTCGTCGGCAGCGCCGTTGGTAGCTTGCTC 
GGTCATTTTCGGGCCTTCCCTTGGGTCAATTCATGA