ViewGene
Locus Name:
GeneID:
Location:

GeneID:5255
TrivialName: PA14_32980
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32980
PAO1 Ortholog Locus:
Sequence Length:405
Protein Length:134
Start: 2885708
Stop: 2886104
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID5255 (PA14_32980) replaced by GID7408 (PA14_32985). Homology: gb|AAG05834.1|AE004672_2 (AE004672) glycine cleavage system protein H2 [Pseudomonas aeruginosa PAO1]
Identities = 91/95 (95%), Positives = 92/95 (96%), Gaps = 1/95 (1%)
Sequence:
ATGAGGATCCAGCATGAGCAAGTTGCGCTTTACCACCGACCACGAATGGCTGCGCCAGGACGACGACGGGCT
GCTGACCGtCGGCATCACCGccCTACgccccagggacgcccctcgggtgacgtggtattcgtgCAGTtgccg
gaactcgggccgaacacgcccgcCgGCAGtGaagtggCGGTGCTGGAGTCGGTCAAGGCCGcCAGCAACATc
CtgATGCCGCTGGAcggggaGGTGGTAGCGATCAACGACGCGCTGCCGGACGCCCCGGAGCTGGTCAaccAG
GACCCACTCGGCGAGGCCTGGTTCTTCCGCTTCCGTCCGGCCGACGCCGGCGCCTGGGAAAAGCTGCTCGAC
CAGGCCGCCTACGACCGCCTGCTGAACGCCAACGCCGACGCCTGA
Translation:
MRIQHEQVALYHRPRMAAPGRRRAADRRHHRPTPQGRPSGDVVFVQLPELGPNTPAGSEVAVLESVKAASNI
LMPLDGEVVAINDALPDAPELVNQDPLGEAWFFRFRPADAGAWEKLLDQAAYDRLLNANADA*
AnnotationID:5260GeneID:5255
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 15:03:23
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID5255 (PA14_32980) replaced by GID7408 (PA14_32985).


















    ReferenceID:10510




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27655




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5255
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7659
                           PA2446_tr
                           translation of PA2446
                           145
                           65.51
                           66.89
                           29
                           439.0
     

     
     
195273
                           gb|AAG05834.1|AE004672_2
                           (AE004672) glycine cleavage system protein H2 [Pseudomonas aeruginosa PAO1]
                           145
                           65.51
                           66.89
                           29
                           439.0
     

     
     
195274
                           gb|AAN66614.1|AE016289_2
                           (AE016777) glycine cleavage system H protein [Pseudomonas putida KT2440]
                           139
                           49.64
                           58.99
                           17
                           290.0
     

     
     
195275
                           gb|AAO54802.1|
                           (AE016860) glycine cleavage system H protein [Pseudomonas syringae pv. tomato str. DC3000]
                           145
                           46.89
                           52.41
                           29
                           270.0
     

     
     
195287
                           dbj|BAB37198.1|
                           (AP002563) glycine cleavage system H protein [Escherichia coli O157:H7]
                           143
                           37.76
                           48.95
                           23
                           240.0
     

     






      

          
GC ORFID: 48257How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2446Glimmer Score: 

          
Start: 2068216Stop: 2067812

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2446 translation of PA2446Homolog Bit Score 178.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4965 (ORF: BLASTX 118.0), t_PA2446 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGATCCAGCATGAGCAAGTTGCGCTTTACCACCGACCACGAATGGCTGCGCCAGGACGACGACGGGCT 
GCTGACCGtCGGCATCACCGccCTACgccccagggacgcccctcgggtgacgtggtattcgtgCAGTtgccg 
gaactcgggccgaacacgcccgcCgGCAGtGaagtggCGGTGCTGGAGTCGGTCAAGGCCGcCAGCAACATc 
CtgATGCCGCTGGAcggggaGGTGGTAGCGATCAACGACGCGCTGCCGGACGCCCCGGAGCTGGTCAaccAG 
GACCCACTCGGCGAGGCCTGGTTCTTCCGCTTCCGTCCGGCCGACGCCGGCGCCTGGGAAAAGCTGCTCGAC 
CAGGCCGCCTACGACCGCCTGCTGAACGCCAACGCCGACGCCTGA