ViewGene
Locus Name:
GeneID:
Location:

GeneID:5232
TrivialName: PA14_53440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53440
PAO1 Ortholog Locus:
Sequence Length:504
Protein Length:167
Start: 4738035
Stop: 4738538
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA18572.1| (L13261) GTG start codon, orf159 [Escherichia coli]
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Sequence:
GTGGTGGTGACCGCCTTCGCCATGGATGTGACCATGGGCGATTTCCTCGGCGTTGGCCTCGCGCACGTCGAC
TACCTTGACCTTGAAGTTCAGGCGCTGGCCGGCCAGCGGATGGTTGCCATCGACGGTCACGTCGTCGCCGTC
GATGTCGCGGATGGTGACGATCTGCATGCCGCCGTCCGGAGCCGAGGCGTGGAACTGCATGCCGACTTCCAG
TTCGTCGACGCCTTCGAACATCTCGCGGGTCAGGGTCGCGACCAGTTCGGCGCTGTATTCGCCATAGGCGTC
TTCCGGCTCGATGGCGACGCTCAGTTCGTCACCGACGTTCTTGCCTTCCAGGGCCTTCTCCAGGCCGACGAT
GATGTTGCCGGCACCGTGCAGGTAGACCAGCGGCGCGCCACCAGCGGAACTGTCGATGACATCCCCGGCGTC
GTTGGTCAGGGTATAGTCGATGGAAACCGCCTTGTTGGCCGCGATCTGCATGGTTCGAAACCTTTTCGATAA
Translation:
MVVTAFAMDVTMGDFLGVGLAHVDYLDLEVQALAGQRMVAIDGHVVAVDVADGDDLHAAVRSRGVELHADFQ
FVDAFEHLAGQGRDQFGAVFAIGVFRLDGDAQFVTDVLAFQGLLQADDDVAGTVQVDQRRATSGTVDDIPGV
VGQGIVDGNRLVGRDLHGSKPFR*
AnnotationID:5237GeneID:5232
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15284




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold3_revised_gene5044Glimmer Score: 

          
Start: 215872Stop: 215369

          
Length: 504


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene5044 related to: gi|1361036|pir||B49988 hypothetical 19K protein (slyD region) - Escherichia coli gb|AAA18572.1| (L13261) GTG start codon, orf159 [Escherichia coli]Homolog Bit Score 183.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5044 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTGGTGACCGCCTTCGCCATGGATGTGACCATGGGCGATTTCCTCGGCGTTGGCCTCGCGCACGTCGAC 
TACCTTGACCTTGAAGTTCAGGCGCTGGCCGGCCAGCGGATGGTTGCCATCGACGGTCACGTCGTCGCCGTC 
GATGTCGCGGATGGTGACGATCTGCATGCCGCCGTCCGGAGCCGAGGCGTGGAACTGCATGCCGACTTCCAG 
TTCGTCGACGCCTTCGAACATCTCGCGGGTCAGGGTCGCGACCAGTTCGGCGCTGTATTCGCCATAGGCGTC 
TTCCGGCTCGATGGCGACGCTCAGTTCGTCACCGACGTTCTTGCCTTCCAGGGCCTTCTCCAGGCCGACGAT 
GATGTTGCCGGCACCGTGCAGGTAGACCAGCGGCGCGCCACCAGCGGAACTGTCGATGACATCCCCGGCGTC 
GTTGGTCAGGGTATAGTCGATGGAAACCGCCTTGTTGGCCGCGATCTGCATGGTTCGAAACCTTTTCGATAA