ViewGene
Locus Name:
GeneID:
Location:

GeneID:5212
TrivialName: PA14_38700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38700
PAO1 Ortholog Locus:PA1996
Sequence Length:279
Protein Length:92
Start: 3451794
Stop: 3452072
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05384.1|AE004626_3 (AE004626) peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PAO1]
Identities = 92/92 (100%), Positives = 92/92 (100%)
Sequence:
ATGCCCGTCGCCATGGCCCGCCACATCCTGGTCAAGACCGAAGCCGAGGCCGCCCAACTGAAGCAGCGCCTG
GCCAAGGGCGAGGACTTCGCCACACTGGCGAAGAAGCATTCGACCTGCCCGTCCGGCAAGCGCGGCGGCGAC
CTCGGCGAGGTGCGTCCGGGGCAGATGGTCAGGTCCATCGACAATGCCATCTTCAGGAAACCCGTGGGCGTG
CTCCAGGGTCCGCTGAAGAGCCAGTTCGGCTACCATCTCCTGGAAGTGTATTTCCGCGACTGA
Translation:
MPVAMARHILVKTEAEAAQLKQRLAKGEDFATLAKKHSTCPSGKRGGDLGEVRPGQMVRSIDNAIFRKPVGV
LQGPLKSQFGYHLLEVYFRD*
AnnotationID:5217GeneID:5212
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 16:04:24
Gene Name:ppiC1
Confidence Code:2
GeneProduct: peptidyl-prolyl cis-trans isomerase C1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:rotamase
Functional Category Confidence Code:5
COGs:pfam00639
Secondary Functional Category(ies):
EC Number:5.2.1.8
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56524.1| (AE016866) peptidyl-prolyl cis-trans isomerase C [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 91

 Score =  139 bits (350), Expect = 3e-33
 Identities = 65/89 (73%), Positives = 77/89 (86%)

>gb|AAN54884.1|AE015627_2 (AE015627) peptidyl-prolyl cis-trans isomerase C [Shewanella
          oneidensis MR-1]
          Length = 92

 Score =  106 bits (265), Expect = 2e-23
 Identities = 49/91 (53%), Positives = 64/91 (70%)






 
Structural Features:
pfam00639, Rotamase, PPIC-type PPIASE domain. 
CD-Length = 90 residues,  97.8% aligned
Score = 95.0 bits (236), Expect = 1e-21
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 7/88 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10424




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32730




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5212_cdd.html


    		




 
URL:

















    ReferenceID:34376




  
Author/Investigator(s):
        Liu J, Walsh CT.





  
Title:
        Peptidyl-prolyl cis-trans-isomerase from Escherichia coli: a periplasmic homolog of cyclophilin that is not inhibited by cyclosporin A.




  
PubMed:
        2190212


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1990 Jun;87(11):4028-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2190212

















    ReferenceID:34377




  
Author/Investigator(s):
        Rahfeld JU, Rucknagel KP, Stoller G, Horne SM, Schierhorn A, Young KD, Fischer G.





  
Title:
        Isolation and amino acid sequence of a new 22-kDa FKBP-like peptidyl-prolyl cis/trans-isomerase of Escherichia coli. Similarity to Mip-like proteins of pathogenic bacteria.




  
PubMed:
        8703024


MedLine:
        




    
Source:
J Biol Chem. 1996 Sep 6;271(36):22130-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8703024









           
Homologs By Global Alignment 

           

       



     
Gene ID:5212
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7622
                           PA1996_tr
                           translation of PA1996
                           92
                           99.99
                           99.99
                           0
                           473.0
     

     
     
195084
                           gb|AAG05384.1|AE004626_3
                           (AE004626) peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PAO1]
                           92
                           99.99
                           99.99
                           0
                           473.0
     

     
     
195085
                           gb|AAO56524.1|
                           (AE016866) peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv. tomato str. DC3000]
                           92
                           70.65
                           83.69
                           1
                           346.0
     

     
     
195086
                           gb|AAN68678.1|AE016497_3
                           (AE016785) peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440]
                           92
                           65.21
                           79.34
                           1
                           320.0
     

     
     
195087
                           gb|AAG07563.1|AE004834_3
                           (AE004834) peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PAO1]
                           93
                           54.83
                           70.96
                           1
                           270.0
     

     






      

          
GC ORFID: 48214How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1996Glimmer Score: 

          
Start: 1502117Stop: 1501839

          
Length: 279


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1996 translation of PA1996Homolog Bit Score 186.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6047 (ORF: BLASTX 136.0), t_PA4176 (ORF: BLASTX 108.0), psyr_15may02_Scaffold5_revised_gene6042 (ORF: BLASTX 105.0), t_PA1996 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGTCGCCATGGCCCGCCACATCCTGGTCAAGACCGAAGCCGAGGCCGCCCAACTGAAGCAGCGCCTG 
GCCAAGGGCGAGGACTTCGCCACACTGGCGAAGAAGCATTCGACCTGCCCGTCCGGCAAGCGCGGCGGCGAC 
CTCGGCGAGGTGCGTCCGGGGCAGATGGTCAGGTCCATCGACAATGCCATCTTCAGGAAACCCGTGGGCGTG 
CTCCAGGGTCCGCTGAAGAGCCAGTTCGGCTACCATCTCCTGGAAGTGTATTTCCGCGACTGA