ViewGene
Locus Name:
GeneID:
Location:

GeneID:5193
TrivialName: PA14_07350
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07350
PAO1 Ortholog Locus:
Sequence Length:285
Protein Length:94
Start: 631724
Stop: 632008
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID7369 (PA14_07355). Homology: gb|AAG03954.1|AE004492_13 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/94 (98%), Positives = 94/94 (100%)
Sequence:
CTGGGCAAGCAACACCCGAAGATGCTCGCCGCCTATGGCGCGCTGGAGGAAGCCAGTGCCGAGGGCGCCCTG
GATGCCAAGACCCGCGAACTGATCTCCATCGCCGTGGCTATTACCACCCGTTGCGACGGTTGCATCGGCGTG
CACACCGAGGCCGCGCTGAAGGCCGGCGCCAGCGAGGCGGAAATCGCCCAGACCCTGGCTACCGCCATCTCC
CTGAATGCCGGCGCCGCCTATGTCTATTCGCTGCGCGCGCTGGAAGCCTACGACCAGTTCAAAAAGTGA
Translation:
MGKQHPKMLAAYGALEEASAEGALDAKTRELISIAVAITTRCDGCIGVHTEAALKAGASEAEIAQTLATAIS
LNAGAAYVYSLRALEAYDQFKK*
AnnotationID:5198GeneID:5193
AnnotatorUID: danlee
Modification Date/Time: 2005-11-30 19:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative carboxymuconolactone decarboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02627
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN68034.1|AE016436_2 (AE016783) carboxymuconolactone decarboxylase family protein
           [Pseudomonas putida KT2440]
          Length = 117

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

>emb|CAE44863.1| (BX640412) probable carboxymuconolactone decarboxylase [Bordetella
           pertussis]
          Length = 111

 Score = 94.7 bits (234), Expect = 9e-20
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 1/91 (1%)






 
Structural Features:
pfam02627, CMD, Carboxymuconolactone decarboxylase family.
CD-Length = 92 residues,  96.7% aligned
Score = 61.1 bits (148), Expect = 3e-11
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15268




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27530




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33853




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5193_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5193
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7604
                           PA0565_tr
                           translation of PA0565
                           112
                           83.92
                           83.92
                           18
                           460.0
     

     
     
194671
                           gb|AAG03954.1|AE004492_13
                           (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           112
                           83.92
                           83.92
                           18
                           460.0
     

     
     
194672
                           emb|CAB85010.1|
                           (AL162757) conserved hypothetical protein [Neisseria meningitidis Z2491]
                           112
                           60.71
                           69.64
                           19
                           331.0
     

     
     
194673
                           gb|AAF41943.1|
                           (AE002509) conserved hypothetical protein [Neisseria meningitidis MC58]
                           112
                           60.71
                           69.64
                           19
                           331.0
     

     
     
194674
                           gb|AAC22712.1|
                           (U32786) conserved hypothetical protein [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20]
                           113
                           60.17
                           68.14
                           19
                           325.0
     

     






      

          
GC ORFID: 48195How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0565Glimmer Score: 

          
Start: 6433067Stop: 6433351

          
Length: 285


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0565 translation of PA0565Homolog Bit Score 189.0

          
Other Homologs:  t_PA0565 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGGGCAAGCAACACCCGAAGATGCTCGCCGCCTATGGCGCGCTGGAGGAAGCCAGTGCCGAGGGCGCCCTG 
GATGCCAAGACCCGCGAACTGATCTCCATCGCCGTGGCTATTACCACCCGTTGCGACGGTTGCATCGGCGTG 
CACACCGAGGCCGCGCTGAAGGCCGGCGCCAGCGAGGCGGAAATCGCCCAGACCCTGGCTACCGCCATCTCC 
CTGAATGCCGGCGCCGCCTATGTCTATTCGCTGCGCGCGCTGGAAGCCTACGACCAGTTCAAAAAGTGA