ViewGene
Locus Name:
GeneID:
Location:

GeneID:5112
TrivialName: PA14_30210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30210
PAO1 Ortholog Locus:
Sequence Length:369
Protein Length:122
Start: 2616936
Stop: 2617304
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69603.1|AE016593_11 (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 100/121 (82%), Positives = 114/121 (94%), Gaps = 2/121 (1%)
Sequence:
ATGCATGCACCTAGCCAGATTCGACTAACATTCAATCAGGACCATCCCGAGCCTCATGAACACGAGGACGAA
GGGGCGGGGCTCGCGGTACAGGAGTCGAAGCCTGTATTACAGCCGCCACCGTTGTATAAGGTGGTACTGTTC
AACGACGATTACACGCCGATGGACTTTGTTGTTGAAGTGCTGGAAGTGTTCTTCAACATGGACCGGGAAAAA
GCCACCAAGATCATGTTGACGGTACATACTCAGGGTAAGGCGGTCTGCGGCTTGTTTACCCGGGACGTGGCC
GAAACCAAGGCGATGCAGGTCAATCAGTATGCACGGGAGAGCCAGCATCCATTGCTCTGCGAGATAGAGAAA
GACAGTTGA
Translation:
MHAPSQIRLTFNQDHPEPHEHEDEGAGLAVQESKPVLQPPPLYKVVLFNDDYTPMDFVVEVLEVFFNMDREK
ATKIMLTVHTQGKAVCGLFTRDVAETKAMQVNQYARESQHPLLCEIEKDS*
AnnotationID:5117GeneID:5112
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 14:02:42
Gene Name:clpS
Confidence Code:2
GeneProduct:ATP-dependent Clp protease adaptor protein clpS
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02617
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12230856|sp|Q9I0L7|CLPS_PSEAE  ATP-dependent Clp protease adaptor protein clpS
Length=122

 Score =  253 bits (645),  Expect = 2e-66
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

gi|77383816|gb|ABA75329.1|  ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas 
fluorescens PfO-1]
 gi|77459813|ref|YP_349320.1|  ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas 
fluorescens PfO-1]
Length=127

 Score =  207 bits (528),  Expect = 7e-53
 Identities = 100/126 (79%), Positives = 112/126 (88%), Gaps = 5/126 (3%)






 
Structural Features:
pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS.
CD-Length = 85 residues,  98.8% aligned
Score = 92.3 bits (229), Expect = 1e-20
Identities = 35/84 (41%), Positives = 53/84 (63%)







   
Genomic Context:






   
Comment:
C-terminus (amino acids 45-78) are identical to PAO1 PA2621.  
NOTE: updated PAO1 entries show a full-length ORF that matches sequence of GeneID5112 (PA14_30210).


















    ReferenceID:10224




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27368




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33185




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5112_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5112
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
193303
                           gb|AAN69603.1|AE016593_11
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           122
                           81.96
                           93.44
                           2
                           538.0
     

     
     
193304
                           gb|AAO56832.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           79.50
                           90.16
                           2
                           517.0
     

     
     
7519
                           PA2621_tr
                           translation of PA2621
                           122
                           63.93
                           63.93
                           44
                           403.0
     

     
     
193305
                           gb|AAG06009.1|AE004690_9
                           (AE004690) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           122
                           63.11
                           63.93
                           44
                           400.0
     

     
     
193316
                           emb|CAC90196.1|
                           (AJ414148) conserved hypothetical protein [Yersinia pestis CO92]
                           122
                           50.00
                           64.75
                           16
                           309.0
     

     






      

          
GC ORFID: 48114How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold17_revised_gene2807Glimmer Score: 

          
Start: 2336990Stop: 2336622

          
Length: 369


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold17_revised_gene2807 related to: gi|12230856|sp|Q9I0L7|YQ21_PSEAE Hypothetical protein PA2621Homolog Bit Score 206.0

          
Other Homologs:  t_PA2621 (ORF: BLASTX 159.0), psyr_15may02_Scaffold17_revised_gene2807 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGCACCTAGCCAGATTCGACTAACATTCAATCAGGACCATCCCGAGCCTCATGAACACGAGGACGAA 
GGGGCGGGGCTCGCGGTACAGGAGTCGAAGCCTGTATTACAGCCGCCACCGTTGTATAAGGTGGTACTGTTC 
AACGACGATTACACGCCGATGGACTTTGTTGTTGAAGTGCTGGAAGTGTTCTTCAACATGGACCGGGAAAAA 
GCCACCAAGATCATGTTGACGGTACATACTCAGGGTAAGGCGGTCTGCGGCTTGTTTACCCGGGACGTGGCC 
GAAACCAAGGCGATGCAGGTCAATCAGTATGCACGGGAGAGCCAGCATCCATTGCTCTGCGAGATAGAGAAA 
GACAGTTGA