ViewGene
Locus Name:
GeneID:
Location:

GeneID:5099
TrivialName: PA14_69770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69770
PAO1 Ortholog Locus:PA5285
Sequence Length:318
Protein Length:105
Start: 6223565
Stop: 6223248
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08670.1|AE004941_3 (AE004941) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/105 (99%), Positives = 104/105 (99%)
Sequence:
ATGAGCGAAGAAGAACTGGAACAGGACGAGCTGGACGGCGCTGACGAGGACGACGGCGAAGAGCTGGCCGCG
GCCGACGACGGCGAAGCGGACAGCAGTGACGGCGACGAGGCCCCCGCCCCCGGCAAGAAGGCGAAAGCCGCC
GTGGTGGAAGAGGAACTGCCCTCGGTCGAAGCCAAGCAGAAAGAGCGTGACGCCCTCGCCAAGGCGATGGAG
GAATTCCTTTCCCGCGGTGGAAAGGTGCAGGAGATCGAACCCAACGTGGTGGCCGATCCGCCGAAGAAGCCG
GACAGCAAGTACGGCAGCCGCCCCATCTGA
Translation:
MSEEELEQDELDGADEDDGEELAAADDGEADSSDGDEAPAPGKKAKAAVVEEELPSVEAKQKERDALAKAME
EFLSRGGKVQEIEPNVVADPPKKPDSKYGSRPI*
AnnotationID:5104GeneID:5099
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5285
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10198




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27342




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5099
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7507
                           PA5285_tr
                           translation of PA5285
                           105
                           99.04
                           99.04
                           0
                           526.0
     

     
     
193259
                           gb|AAG08670.1|AE004941_3
                           (AE004941) hypothetical protein PA5285 [Pseudomonas aeruginosa PAO1]
                           105
                           99.04
                           99.04
                           0
                           526.0
     

     
     
193261
                           gb|AAL83557.1|AF414717_7
                           (AF414717) PA5285-like protein [Pseudomonas stutzeri]
                           110
                           69.09
                           82.72
                           6
                           365.0
     

     
     
193260
                           gb|AAN70797.1|AE016723_9
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           109
                           68.80
                           83.48
                           4
                           376.0
     

     
     
193262
                           gb|AAO53766.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           110
                           68.18
                           78.18
                           6
                           348.0
     

     






      

          
GC ORFID: 48101How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5285Glimmer Score: 

          
Start: 5487252Stop: 5486935

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5285 translation of PA5285Homolog Bit Score 207.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3962 (ORF: BLASTX 130.0), t_PA5285 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAGAAGAACTGGAACAGGACGAGCTGGACGGCGCTGACGAGGACGACGGCGAAGAGCTGGCCGCG 
GCCGACGACGGCGAAGCGGACAGCAGTGACGGCGACGAGGCCCCCGCCCCCGGCAAGAAGGCGAAAGCCGCC 
GTGGTGGAAGAGGAACTGCCCTCGGTCGAAGCCAAGCAGAAAGAGCGTGACGCCCTCGCCAAGGCGATGGAG 
GAATTCCTTTCCCGCGGTGGAAAGGTGCAGGAGATCGAACCCAACGTGGTGGCCGATCCGCCGAAGAAGCCG 
GACAGCAAGTACGGCAGCCGCCCCATCTGA