ViewGene
Locus Name:
GeneID:
Location:

GeneID:5084
TrivialName: PA14_40170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40170
PAO1 Ortholog Locus:PA1882
Sequence Length:324
Protein Length:107
Start: 3579476
Stop: 3579153
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05271.1|AE004614_5 (AE004614) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGGCGTGGATCTATCTCTTGCTCGCCGGTGTCTTCGAAATCGTCTGGGCCACGGCCATGAAGGAGTCGGCC
GGCTTCACCCGCCTGTGGCCAAGCCTGGTCACCCTGCTGTTCATGATCCTCAGCTTCGGCCTGCTGGCCGTT
TCCATGAAAACCCTGCCCCTCGGCACGGCCTACACCATCTGGGTCGGCATCGGTGCGGTCGGCGCCTTCGCC
CTGGGCATCCTGCTCTTCGGCGAAAGCCCGAGCCCGTTGCGGCTGCTGGCGGTGGGGCTGATCGTGGCCGGC
ATCGTCATTCTCAAGCTGGCGACCCGCCAGGGCTGA
Translation:
MAWIYLLLAGVFEIVWATAMKESAGFTRLWPSLVTLLFMILSFGLLAVSMKTLPLGTAYTIWVGIGAVGAFA
LGILLFGESPSPLRLLAVGLIVAGIVILKLATRQG*
AnnotationID:5089GeneID:5084
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:sugE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative quaternary ammonium compound-resistance protein SugE
Functional Category Confidence Code:5
COGs:COG2076,pfam00893
Secondary Functional Category(ies):secreted factors (toxins, enzymes, alginate)
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAQ16658.1| (AY339625) SugE [Escherichia coli]
          Length = 105

 Score =  132 bits (331), Expect = 5e-31
 Identities = 63/104 (60%), Positives = 83/104 (79%)

>gb|AAP92686.1| (AY253913) SugE [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
          Length = 105

 Score =  132 bits (331), Expect = 5e-31
 Identities = 63/104 (60%), Positives = 83/104 (79%)

>emb|CAC89214.1| (AJ414142) putative chaperone [Yersinia pestis CO92]
          Length = 104

 Score =  123 bits (308), Expect = 2e-28
 Identities = 60/104 (57%), Positives = 80/104 (76%)







 
Structural Features:
COG2076, EmrE, Membrane transporters of cations and cationic drugs 
[Inorganic ion transport and metabolism]
CD-Length = 106 residues,  99.1% aligned
Score = 93.2 bits (232), Expect = 7e-21
Identities = 60/105 (57%), Positives = 81/105 (77%)

pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein.
CD-Length = 93 residues, 100.0% aligned
Score = 78.3 bits (193), Expect = 2e-16
Identities = 43/93 (46%), Positives = 64/93 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10168




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27311




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37043




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5084_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5084
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7490
                           PA1882_tr
                           translation of PA1882
                           107
                           99.99
                           99.99
                           0
                           531.0
     

     
     
192945
                           gb|AAG05271.1|AE004614_5
                           (AE004614) probable  transporter [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           531.0
     

     
     
192953
                           emb|CAD06818.1|
                           (AL627283) SugE protein [Salmonella enterica subsp. enterica serovar Typhi]
                           107
                           58.87
                           76.63
                           2
                           329.0
     

     
     
192952
                           gb|AAO71841.1|
                           (AE016849) SugE protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           107
                           58.87
                           76.63
                           2
                           329.0
     

     
     
192951
                           gb|AAL23161.1|
                           (AE008903) putative DMT superfamily transport protein [Salmonella typhimurium LT2]
                           107
                           58.87
                           76.63
                           2
                           329.0
     

     






      

          
GC ORFID: 48086How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1882Glimmer Score: 

          
Start: 1374434Stop: 1374757

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1882 translation of PA1882Homolog Bit Score 209.0

          
Other Homologs:  t_PA3265 (ORF: BLASTX 115.0), t_PA0786 (ORF: BLASTX 101.0)

          
GC ORF Sequence

           
ATGGCGTGGATCTATCTCTTGCTCGCCGGTGTCTTCGAAATCGTCTGGGCCACGGCCATGAAGGAGTCGGCC 
GGCTTCACCCGCCTGTGGCCAAGCCTGGTCACCCTGCTGTTCATGATCCTCAGCTTCGGCCTGCTGGCCGTT 
TCCATGAAAACCCTGCCCCTCGGCACGGCCTACACCATCTGGGTCGGCATCGGTGCGGTCGGCGCCTTCGCC 
CTGGGCATCCTGCTCTTCGGCGAAAGCCCGAGCCCGTTGCGGCTGCTGGCGGTGGGGCTGATCGTGGCCGGC 
ATCGTCATTCTCAAGCTGGCGACCCGCCAGGGCTGA