ViewGene
Locus Name:
GeneID:
Location:

GeneID:5071
TrivialName: PA14_46670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46670
PAO1 Ortholog Locus:PA1362
Sequence Length:324
Protein Length:107
Start: 4160223
Stop: 4159900
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04751.1|AE004565_10 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGGCTAAGGCCGATGATACGTCGAATCCCGCAATAACCGCACAGTCCCCTTCCACCTTCATCCCCCTGCGA
CGCACCTCGCAATGCAACCAGCACCCCGGCTGCGCCACCCTCTACCTGGACAGCAGCGCAGCCAGCGAAGAC
CTGTTCGACACCGCCCGCCGCCGGCTGGAGTCGGCGATCGGAACGCTGAGCGTCCTCGACCTGCTCGACGAA
ACCGAAGAGCCCGGCGAAAGCATCTGCCGCATCACCGGTTCCCTGCTGTCGTTGCTCAGCGACGCCCTGTCG
CTGTTCGAGGCGGAATACGCACGCAGACACCGATAA
Translation:
MAKADDTSNPAITAQSPSTFIPLRRTSQCNQHPGCATLYLDSSAASEDLFDTARRRLESAIGTLSVLDLLDE
TEEPGESICRITGSLLSLLSDALSLFEAEYARRHR*
AnnotationID:5076GeneID:5071
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1362
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10142




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27285




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5071
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7477
                           PA1362_tr
                           translation of PA1362
                           107
                           99.99
                           99.99
                           0
                           537.0
     

     
     
192845
                           gb|AAG04751.1|AE004565_10
                           (AE004565) hypothetical protein PA1362 [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           537.0
     

     
     
192846
                           gb|AAG04208.1|AE004517_3
                           (AE004517) hypothetical protein PA0819 [Pseudomonas aeruginosa PAO1]
                           107
                           81.30
                           82.24
                           10
                           416.0
     

     
     
7478
                           PA0819_tr
                           translation of PA0819
                           107
                           79.43
                           80.37
                           10
                           415.0
     

     






      

          
GC ORFID: 48073How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1362Glimmer Score: 

          
Start: 793686Stop: 794009

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1362 translation of PA1362Homolog Bit Score 211.0

          
Other Homologs:  t_PA0819 (ORF: BLASTX 164.0), t_PA1362 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTAAGGCCGATGATACGTCGAATCCCGCAATAACCGCACAGTCCCCTTCCACCTTCATCCCCCTGCGA 
CGCACCTCGCAATGCAACCAGCACCCCGGCTGCGCCACCCTCTACCTGGACAGCAGCGCAGCCAGCGAAGAC 
CTGTTCGACACCGCCCGCCGCCGGCTGGAGTCGGCGATCGGAACGCTGAGCGTCCTCGACCTGCTCGACGAA 
ACCGAAGAGCCCGGCGAAAGCATCTGCCGCATCACCGGTTCCCTGCTGTCGTTGCTCAGCGACGCCCTGTCG 
CTGTTCGAGGCGGAATACGCACGCAGACACCGATAA