ViewGene
Locus Name:
GeneID:
Location:

GeneID:5025
TrivialName: PA14_18650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18650
PAO1 Ortholog Locus:PA3533
Sequence Length:327
Protein Length:108
Start: 1605748
Stop: 1606074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06921.1|AE004773_10 (AE004773) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGGACATCATCGAAACCATTAAAGAGCAGATCGCCAACAACCCCATCCTGCTGTACATGAAGGGTTCGCCG
AACGCCCCGCAGTGCGGTTTCTCCTCGCGCGCGGCCCAGGTGCTGATGGCCTGTGGCGAGAAGTTCGCCTAC
GTCGACATCCTGCAGAACCCGGAAATCCGCGCCAACCTGCCGAAGTACGCGAACTGGCCGACCTTCCCGCAG
CTGTGGGTCAATGGCGAACTGGTCGGCGGCAGCGACATCCTCGCCGAGATGTTCGAGAAGGGCGAACTGCAG
ACCCTGGTCAAGGACGCGGCGGCCAAAGCCAACGCCTGA
Translation:
MDIIETIKEQIANNPILLYMKGSPNAPQCGFSSRAAQVLMACGEKFAYVDILQNPEIRANLPKYANWPTFPQ
LWVNGELVGGSDILAEMFEKGELQTLVKDAAAKANA*
AnnotationID:5030GeneID:5025
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 17:05:39
Gene Name:
Confidence Code:3
GeneProduct:glutaredoxin-related protein
Cell Localization:()
Synonyms:ydhD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0278
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66706.1|AE016299_2 (AE016778) glutaredoxin-related protein [Pseudomonas putida KT2440]
          Length = 111

 Score =  202 bits (515), Expect = 2e-52
 Identities = 97/108 (89%), Positives = 102/108 (94%)

>gb|AAO11429.1|AE016807_148 (AE016807) Glutaredoxin-related protein [Vibrio vulnificus CMCP6]
          Length = 112

 Score =  177 bits (449), Expect = 1e-44
 Identities = 82/106 (77%), Positives = 93/106 (87%)

>gb|AAN80508.1|AE016761_83 (AE016761) Protein ydhD [Escherichia coli CFT073]
          Length = 115

 Score =  166 bits (421), Expect = 2e-41
 Identities = 76/102 (74%), Positives = 88/102 (86%)







 
Structural Features:
COG0278, Glutaredoxin-related protein 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 105 residues,  99.0% aligned
Score =  172 bits (437), Expect = 7e-45
Identities = 64/104 (61%), Positives = 86/104 (82%), Gaps = 1/104 (0%)









   
Genomic Context:






   
Comment:


















    ReferenceID:10050




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32030




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5025_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5025
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7430
                           PA3533_tr
                           translation of PA3533
                           108
                           99.99
                           99.99
                           0
                           562.0
     

     
     
192165
                           gb|AAG06921.1|AE004773_10
                           (AE004773) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           108
                           99.99
                           99.99
                           0
                           562.0
     

     
     
192166
                           gb|AAN66706.1|AE016299_2
                           (AE016778) glutaredoxin-related protein [Pseudomonas putida KT2440]
                           111
                           87.38
                           91.89
                           3
                           515.0
     

     
     
192167
                           gb|AAO57617.1|
                           (AE016871) glutaredoxin-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           109
                           83.48
                           89.90
                           2
                           472.0
     

     
     
192170
                           gb|AAF95192.1|
                           (AE004279) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           110
                           73.63
                           85.45
                           2
                           445.0
     

     






      

          
GC ORFID: 48027How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3533Glimmer Score: 

          
Start: 3348186Stop: 3347860

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3533 translation of PA3533Homolog Bit Score 221.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6264 (ORF: BLASTX 188.0), t_PA3533 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATCATCGAAACCATTAAAGAGCAGATCGCCAACAACCCCATCCTGCTGTACATGAAGGGTTCGCCG 
AACGCCCCGCAGTGCGGTTTCTCCTCGCGCGCGGCCCAGGTGCTGATGGCCTGTGGCGAGAAGTTCGCCTAC 
GTCGACATCCTGCAGAACCCGGAAATCCGCGCCAACCTGCCGAAGTACGCGAACTGGCCGACCTTCCCGCAG 
CTGTGGGTCAATGGCGAACTGGTCGGCGGCAGCGACATCCTCGCCGAGATGTTCGAGAAGGGCGAACTGCAG 
ACCCTGGTCAAGGACGCGGCGGCCAAAGCCAACGCCTGA