ViewGene
Locus Name:
GeneID:
Location:

GeneID:502
TrivialName: PA14_68510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68510
PAO1 Ortholog Locus:PA5187
Sequence Length:1791
Protein Length:596
Start: 6113108
Stop: 6111318
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08572.1|AE004931_9 (AE004931) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/596 (99%), Positives = 591/596 (99%)
Sequence:
ATGGATTACCAGGCCCCCTTGCGCGACATGCGCTTCGTTCTCCATGAACTGTTCGATGTCGGCGCGCATTGC
GAACTGCTGGGCAACGGCATCGATCGCGAACTGATCGACGGCGTGCTCGAGGAAGGCGCGCGCTACACCGGC
CAGGTGGTGGCGCCGCTCAATCGCAACAGCGACGAGGAAGGCGCGAAGCTGAAGGACGGCGTGGTGACCACC
CCCACCGGCTTTCGCGAAGCCTACCGGCAGTACAGCGAGAACGGCTGGGCGAGCATGACCGGACCCACCGAG
TACGGCGGCCAGGGCTTCCCGCAGATGGTCTCCGCGTGTTTCCACGAGATGTTGATGGCCGCCAGCCTGTCC
TTCCGCGTCTATTCGGGGCTGACCGAGGGCGCCGTGCTGGCCCTGTACAAGCATGGCGACGAGGCGTTGCGG
CGCGACTACCTGGCCAAGCTGGTGAGCGGCGAATGGGCCGGCACCATGTGCCTGACCGAACCCCAGGCCGGC
ACCGACCTCGCCCTCCTGCGCACCCGCGCCGAGGCGCAGGCCGACGGCAGCTACGCGATCAGCGGCAGCAAG
ATCTTCATCAGCGGTGGCGAGCAGGACCTCACCGAGAACATCGTCCACCTGGTGCTGGCGCGCCTGGCGGAC
GCGCCGGCCGGGGTGAAGGGCATCAGTCTGTTCCTGGTGCCGAAGTTCGTCGCCAATCCCGATGGCTCCCTG
GGCGAGCGCAACAGCCTGGGGTGCGGCGCCATCGAGCACAAGATGGGGATCAAGGGCGCTTCCACCTGCGTG
ATGAACTTCGACGGCGCCAGGGGCTGGCTGCTGGGCCAGGCGAACCAGGGCCTGGCCTGCATGTTCACGATG
ATGAACGATGCGCGCTTCCAGGTCGGCCTGCAGGGCCTGGGTATCGCCGAACGGGCCTTCCAGGGCGCCCTC
GGCTACGCCCGCGAGCGCCTGCAGTCGCGCGCCCTGGTCGGCCCGCAGGCACCGGACAAGGCCGCCGACCCG
ATCATCGTGCACCCCGACGTACGGCGCATGCTGCTGACCCAGAAGACCCTGGTCGAAGGCTGCCGCATGCTG
GCGGCCTGCTGTGCACGCCAGCTCGACCTGGAACACGGCCATCCGGATGCCGACGGCCGGCGCGCGGCGACG
CGCCGTGCAGCGCTGCTGATCCCCATCGTCAAGGCCTTCCTTACCGATGTCGGCcAGGAAGTCGCCAGCCTC
GGCGTACAGGTCTATGGCGGTCACGGCTTCATCCGCGAATGGGGCATGGAGCAATTGATGCGCGACAGTCGC
ATCACCCAGaTCTACGAAGGCACCAATGGCATCCAGGCGCTCGATCTGGTCCGCCGCAAGCTGCTCGGCGAC
CAGGGCGGCGAACTGCTGGCGCTGCAAGGCGAACTGGCGGCGGCCagCGaGGCGCTGCAAGGGCGTGCTGCG
CTGGCGCCGCTGGTCGAGCCGGTGCTGCAACGCCTGGAAGAGTGGCGGCAGCTCACCGGCCAGGTACTCGaG
gCCTGCGCCCGCGATCCCCAGGAGATCGGCGCCACTTCCGTGGACTTCCTCCAGTACAGCGCCTACGTATTG
CTCGCGGCCCTCTGGTTGCAAGCCGCTGCACGAGCCCAGGAAGCGCTGGACGGCGGCTCCGGCGAGGGCGAT
TTCTATCGGGCCAAGCTGCGCAGCGCCGATTTCTACCTGCGGCGCATCCTGCCGCGGGCTAGCATGCACCGC
GAAGCCTTGCTCGGTGGCGCCGACTGCCTGATGGCCCTGCCCGAGGAGCATTTCTCGTTCTGA
Translation:
MDYQAPLRDMRFVLHELFDVGAHCELLGNGIDRELIDGVLEEGARYTGQVVAPLNRNSDEEGAKLKDGVVTT
PTGFREAYRQYSENGWASMTGPTEYGGQGFPQMVSACFHEMLMAASLSFRVYSGLTEGAVLALYKHGDEALR
RDYLAKLVSGEWAGTMCLTEPQAGTDLALLRTRAEAQADGSYAISGSKIFISGGEQDLTENIVHLVLARLAD
APAGVKGISLFLVPKFVANPDGSLGERNSLGCGAIEHKMGIKGASTCVMNFDGARGWLLGQANQGLACMFTM
MNDARFQVGLQGLGIAERAFQGALGYARERLQSRALVGPQAPDKAADPIIVHPDVRRMLLTQKTLVEGCRML
AACCARQLDLEHGHPDADGRRAATRRAALLIPIVKAFLTDVGQEVASLGVQVYGGHGFIREWGMEQLMRDSR
ITQIYEGTNGIQALDLVRRKLLGDQGGELLALQGELAAASEALQGRAALAPLVEPVLQRLEEWRQLTGQVLE
ACARDPQEIGATSVDFLQYSAYVLLAALWLQAAARAQEALDGGSGEGDFYRAKLRSADFYLRRILPRASMHR
EALLGGADCLMALPEEHFSF*
AnnotationID:511GeneID:502
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:08
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA5187
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153,cd00567,cd01158
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67662.1|AE016396_4 (AE016781) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 616

 Score =  897 bits (2319), Expect = 0.0
 Identities = 451/596 (75%), Positives = 499/596 (83%), Gaps = 5/596 (0%)

>gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 601

 Score =  610 bits (1573), Expect = e-174
 Identities = 311/595 (52%), Positives = 404/595 (67%), Gaps = 2/595 (0%)

>emb|CAD14001.1| (AL646059) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 595

 Score =  584 bits (1505), Expect = e-166
 Identities = 303/595 (50%), Positives = 399/595 (67%), Gaps = 6/595 (1%)






 
Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues,  99.8% aligned
Score =  441 bits (1135), Expect = 1e-124 

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  95.7% aligned
Score =  200 bits (511), Expect = 3e-52

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  89.3% aligned
Score =  195 bits (497), Expect = 1e-50







   
Genomic Context:






   
Comment:


















    ReferenceID:1007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34908




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:502_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:502
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
881
                           PA5187_tr
                           translation of PA5187
                           596
                           99.16
                           99.16
                           0
                           3041.0
     

     
     
36413
                           gb|AAG08572.1|AE004931_9
                           (AE004931) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           596
                           99.16
                           99.16
                           0
                           3041.0
     

     
     
36414
                           gb|AAN67662.1|AE016396_4
                           (AE016781) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           624
                           72.91
                           80.76
                           36
                           2324.0
     

     
     
882
                           PA0507_tr
                           translation of PA0507
                           601
                           55.07
                           70.04
                           8
                           1676.0
     

     
     
36415
                           gb|AAG03896.1|AE004487_10
                           (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           601
                           55.07
                           70.04
                           8
                           1676.0
     

     






      

          
GC ORFID: 43504How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5187Glimmer Score: 

          
Start: 5376794Stop: 5375004

          
Length: 1791


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5187 translation of PA5187Homolog Bit Score 1176.0

          
Other Homologs:  t_PA0507 (ORF: BLASTX 647.0), t_PA4199 (ORF: BLASTX 621.0), t_PA0506 (ORF: BLASTX 615.0), t_PA0508 (ORF: BLASTX 615.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 593.0), t_PA1284 (ORF: BLASTX 545.0), t_PA5187 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTACCAGGCCCCCTTGCGCGACATGCGCTTCGTTCTCCATGAACTGTTCGATGTCGGCGCGCATTGC 
GAACTGCTGGGCAACGGCATCGATCGCGAACTGATCGACGGCGTGCTCGAGGAAGGCGCGCGCTACACCGGC 
CAGGTGGTGGCGCCGCTCAATCGCAACAGCGACGAGGAAGGCGCGAAGCTGAAGGACGGCGTGGTGACCACC 
CCCACCGGCTTTCGCGAAGCCTACCGGCAGTACAGCGAGAACGGCTGGGCGAGCATGACCGGACCCACCGAG 
TACGGCGGCCAGGGCTTCCCGCAGATGGTCTCCGCGTGTTTCCACGAGATGTTGATGGCCGCCAGCCTGTCC 
TTCCGCGTCTATTCGGGGCTGACCGAGGGCGCCGTGCTGGCCCTGTACAAGCATGGCGACGAGGCGTTGCGG 
CGCGACTACCTGGCCAAGCTGGTGAGCGGCGAATGGGCCGGCACCATGTGCCTGACCGAACCCCAGGCCGGC 
ACCGACCTCGCCCTCCTGCGCACCCGCGCCGAGGCGCAGGCCGACGGCAGCTACGCGATCAGCGGCAGCAAG 
ATCTTCATCAGCGGTGGCGAGCAGGACCTCACCGAGAACATCGTCCACCTGGTGCTGGCGCGCCTGGCGGAC 
GCGCCGGCCGGGGTGAAGGGCATCAGTCTGTTCCTGGTGCCGAAGTTCGTCGCCAATCCCGATGGCTCCCTG 
GGCGAGCGCAACAGCCTGGGGTGCGGCGCCATCGAGCACAAGATGGGGATCAAGGGCGCTTCCACCTGCGTG 
ATGAACTTCGACGGCGCCAGGGGCTGGCTGCTGGGCCAGGCGAACCAGGGCCTGGCCTGCATGTTCACGATG 
ATGAACGATGCGCGCTTCCAGGTCGGCCTGCAGGGCCTGGGTATCGCCGAACGGGCCTTCCAGGGCGCCCTC 
GGCTACGCCCGCGAGCGCCTGCAGTCGCGCGCCCTGGTCGGCCCGCAGGCACCGGACAAGGCCGCCGACCCG 
ATCATCGTGCACCCCGACGTACGGCGCATGCTGCTGACCCAGAAGACCCTGGTCGAAGGCTGCCGCATGCTG 
GCGGCCTGCTGTGCACGCCAGCTCGACCTGGAACACGGCCATCCGGATGCCGACGGCCGGCGCGCGGCGACG 
CGCCGTGCAGCGCTGCTGATCCCCATCGTCAAGGCCTTCCTTACCGATGTCGGCcAGGAAGTCGCCAGCCTC 
GGCGTACAGGTCTATGGCGGTCACGGCTTCATCCGCGAATGGGGCATGGAGCAATTGATGCGCGACAGTCGC 
ATCACCCAGaTCTACGAAGGCACCAATGGCATCCAGGCGCTCGATCTGGTCCGCCGCAAGCTGCTCGGCGAC 
CAGGGCGGCGAACTGCTGGCGCTGCAAGGCGAACTGGCGGCGGCCagCGaGGCGCTGCAAGGGCGTGCTGCG 
CTGGCGCCGCTGGTCGAGCCGGTGCTGCAACGCCTGGAAGAGTGGCGGCAGCTCACCGGCCAGGTACTCGaG 
gCCTGCGCCCGCGATCCCCAGGAGATCGGCGCCACTTCCGTGGACTTCCTCCAGTACAGCGCCTACGTATTG 
CTCGCGGCCCTCTGGTTGCAAGCCGCTGCACGAGCCCAGGAAGCGCTGGACGGCGGCTCCGGCGAGGGCGAT 
TTCTATCGGGCCAAGCTGCGCAGCGCCGATTTCTACCTGCGGCGCATCCTGCCGCGGGCTAGCATGCACCGC 
GAAGCCTTGCTCGGTGGCGCCGACTGCCTGATGGCCCTGCCCGAGGAGCATTTCTCGTTCTGA