ViewGene
Locus Name:
GeneID:
Location:

GeneID:5012
TrivialName: PA14_22630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22630
PAO1 Ortholog Locus:PA3216
Sequence Length:318
Protein Length:105
Start: 1968796
Stop: 1968479
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06604.1|AE004745_1 (AE004745) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/105 (99%), Positives = 104/105 (99%)
Sequence:
ATGAGCAGCCCTGACGACGAGCGTTTCCACAGTTTCGCCGAGTTCTACCCCTACTACCTGCAGGAACACAGC
AATGCGGTGTGCCGCCGCCTGCACTACGTCGGCAGCCTGCTGGTGCTGGCGGTGCTGTTCCTCGCCGTGGCC
AGCCAGCAGTGGCTATGGCTGCTGGCGCTGCCGCTGGTCGGCTATGGCTTCGCCTGGGTCGGCCACTTCGTC
TTCGAGAAGAACCGCCCGGCCACCTTCAAGTACCCGCTGTGGTCGTTCATGGGCGACTGGGTGATGCTCAAG
GACGCTTTCACCGGCCGCATCCGCTTCTGA
Translation:
MSSPDDERFHSFAEFYPYYLQEHSNAVCRRLHYVGSLLVLAVLFLAVASQQWLWLLALPLVGYGFAWVGHFV
FEKNRPATFKYPLWSFMGDWVMLKDAFTGRIRF*
AnnotationID:5017GeneID:5012
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:30
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3216
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4323
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15262.1| (AL646065) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 105

 Score =  137 bits (344), Expect = 2e-32
 Identities = 62/105 (59%), Positives = 74/105 (70%)






 
Structural Features:
COG4323, Predicted membrane protein
CD-Length = 105 residues, 100.0% aligned
Score =  174 bits (441), Expect = 2e-45
Identities = 74/105 (70%), Positives = 81/105 (77%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10024




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32329




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5012_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5012
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7418
                           PA3216_tr
                           translation of PA3216
                           105
                           99.04
                           99.04
                           0
                           569.0
     

     
     
191876
                           gb|AAG06604.1|AE004745_1
                           (AE004745) hypothetical protein PA3216 [Pseudomonas aeruginosa PAO1]
                           105
                           99.04
                           99.04
                           0
                           569.0
     

     
     
191877
                           gb|AAN70083.1|AE016648_1
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           105
                           61.90
                           76.19
                           2
                           356.0
     

     
     
191879
                           emb|CAD15262.1|
                           (AL646065) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           105
                           59.04
                           70.47
                           0
                           344.0
     

     
     
191878
                           gb|AAN54671.1|AE015607_12
                           (AE015607) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           106
                           58.49
                           75.47
                           6
                           352.0
     

     






      

          
GC ORFID: 48014How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3216Glimmer Score: 

          
Start: 2985135Stop: 2985452

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3216 translation of PA3216Homolog Bit Score 223.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7649 (ORF: BLASTX 129.0), t_PA3216 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGCCCTGACGACGAGCGTTTCCACAGTTTCGCCGAGTTCTACCCCTACTACCTGCAGGAACACAGC 
AATGCGGTGTGCCGCCGCCTGCACTACGTCGGCAGCCTGCTGGTGCTGGCGGTGCTGTTCCTCGCCGTGGCC 
AGCCAGCAGTGGCTATGGCTGCTGGCGCTGCCGCTGGTCGGCTATGGCTTCGCCTGGGTCGGCCACTTCGTC 
TTCGAGAAGAACCGCCCGGCCACCTTCAAGTACCCGCTGTGGTCGTTCATGGGCGACTGGGTGATGCTCAAG 
GACGCTTTCACCGGCCGCATCCGCTTCTGA