ViewGene
Locus Name:
GeneID:
Location:

GeneID:4988
TrivialName: PA14_51480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51480
PAO1 Ortholog Locus:PA0991
Sequence Length:378
Protein Length:125
Start: 4577454
Stop: 4577077
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04380.1|AE004532_4 (AE004532) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/125 (96%), Positives = 123/125 (98%)
Sequence:
ATGAAAGCGCTTGGTTCGGAATCGCCGATGGAAAGTCTTTTCGACATTCGTTCGCTGGAGGCCATTACCGGC
GGCGAGCCGGCTGCATTGCGGCGGTTGCTGGAAACTTTATTGGCCAGCAGTCGGGATGATCGTACTCGGTTG
GCGGAATTGCTTGAACTCGCAGACCTGCAAGGAGTGGCCGAACTTGCGCACAGGATAAAAGGGGCTGCGAGG
GTGGTGGGCAGCAGCCTATTGGTCGAGTCTTGTTCCTGCCTTGAAAAGGCTTGCCAGAACCCATCGGAGTCT
TCCGAGCGGATAGCCAATCTGGCCTCTTCATTGGAAGGCAAACTAAGTGCGTTCGAAATCAGTATCTCAACC
GAATTGGCAAGGCTCTAG
Translation:
MKALGSESPMESLFDIRSLEAITGGEPAALRRLLETLLASSRDDRTRLAELLELADLQGVAELAHRIKGAAR
VVGSSLLVESCSCLEKACQNPSESSERIANLASSLEGKLSAFEISISTELARL*
AnnotationID:4993GeneID:4988
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 15:03:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0991
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].  Score: 55.1, 2e-09






   
Genomic Context:






   
Comment:


















    ReferenceID:9976




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4988
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7393
                           PA0991_tr
                           translation of PA0991
                           125
                           96.80
                           98.40
                           0
                           577.0
     

     
     
191296
                           gb|AAG04380.1|AE004532_4
                           (AE004532) hypothetical protein PA0991 [Pseudomonas aeruginosa PAO1]
                           125
                           96.80
                           98.40
                           0
                           577.0
     

     






      

          
GC ORFID: 47990How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0991Glimmer Score: 

          
Start: 376453Stop: 376830

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0991 translation of PA0991Homolog Bit Score 226.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGCGCTTGGTTCGGAATCGCCGATGGAAAGTCTTTTCGACATTCGTTCGCTGGAGGCCATTACCGGC 
GGCGAGCCGGCTGCATTGCGGCGGTTGCTGGAAACTTTATTGGCCAGCAGTCGGGATGATCGTACTCGGTTG 
GCGGAATTGCTTGAACTCGCAGACCTGCAAGGAGTGGCCGAACTTGCGCACAGGATAAAAGGGGCTGCGAGG 
GTGGTGGGCAGCAGCCTATTGGTCGAGTCTTGTTCCTGCCTTGAAAAGGCTTGCCAGAACCCATCGGAGTCT 
TCCGAGCGGATAGCCAATCTGGCCTCTTCATTGGAAGGCAAACTAAGTGCGTTCGAAATCAGTATCTCAACC 
GAATTGGCAAGGCTCTAG