ViewGene
Locus Name:
GeneID:
Location:

GeneID:4979
TrivialName: PA14_08800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08800
PAO1 Ortholog Locus:
Sequence Length:558
Protein Length:185
Start: 755718
Stop: 755161
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF63989.1| (AF214675) unknown in vivo-induced protein 131-19 [Pseudomonas aeruginosa]
Identities = 170/171 (99%), Positives = 171/171 (100%)
Sequence:
GTGGGCACAGATACCGATATTACGGTAGCGGTTGATGGGTGTAGTACGGGCCACAATAAGGTCCTCGGGGGT
TGGGCAGCGCGATTAGAACCGGTAGTGCGAGAAGGCCTTGTTGGCCTCTGCCATACGGTGCACGTCTTCACG
CTTCTTGACTGCTGCGCCCTTGCCTTCAGCGGCATCCAGCAGCTCGCCAGCCAGGCGCAGAGCCATGGACTT
CTCGCCACGCTTGCGGGCGAAGTCCACCAGCCAACGCATGGCCAGGGCATTACGACGGGACGGACGGACTTC
GACCGGAACCTGGTAAGTCGCACCACCTACGCGGCGGGACTTCACTTCGACCAGCGGAGCGATGGCATCGAG
AGCTTTTTCGAAGGTTTCCAGGGGATCGGCCTTGCCGCGTTCCTTCACCTTGTCCAGCGCACCGTAAACGAT
ACGCTCGGCAACGGCTTTCTTGCCGCTTTCCATCACGTGGTTCATGAACTTGGCCAGGATCTGGCTTCCGTA
TTTCGGATCAGCCAGCACTTCACGCTTGGCCGCTACACGACGTCTTGGCATTGA
Translation:
MGTDTDITVAVDGCSTGHNKVLGGWAARLEPVVREGLVGLCHTVHVFTLLDCCALAFSGIQQLASQAQSHGL
LATLAGEVHQPTHGQGITTGRTDFDRNLVSRTTYAAGLHFDQRSDGIESFFEGFQGIGLAAFLHLVQRTVND
TLGNGFLAAFHHVVHELGQDLASVFRISQHFTLGRYTTSWH*
AnnotationID:4984GeneID:4979
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 16:04:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15230




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4979
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
191275
                           gb|AAF63989.1|
                           (AF214675) unknown in vivo-induced protein 131-19 [Pseudomonas aeruginosa]
                           211
                           81.04
                           81.04
                           40
                           896.0
     

     
     
191276
                           emb|CAA78254.1|
                           (Z12610) Hemagglutinin protein [Eikenella corrodens]
                           217
                           37.32
                           48.38
                           37
                           352.0
     

     
     
191277
                           gb|AAN82551.1|AE016767_311
                           (AE016767) Hypothetical protein [Escherichia coli CFT073]
                           185
                           34.59
                           43.78
                           41
                           258.0
     

     






      

          
GC ORFID: 47981How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold4_revised_gene5911Glimmer Score: 

          
Start: 4198221Stop: 4198778

          
Length: 558


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold4_revised_gene5911 related to: gi|7576785|gb|AAF63989.1| (AF214675) unknown in vivo-induced protein 131-19 [Pseudomonas aeruginosa]Homolog Bit Score 229.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5911 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGGCACAGATACCGATATTACGGTAGCGGTTGATGGGTGTAGTACGGGCCACAATAAGGTCCTCGGGGGT 
TGGGCAGCGCGATTAGAACCGGTAGTGCGAGAAGGCCTTGTTGGCCTCTGCCATACGGTGCACGTCTTCACG 
CTTCTTGACTGCTGCGCCCTTGCCTTCAGCGGCATCCAGCAGCTCGCCAGCCAGGCGCAGAGCCATGGACTT 
CTCGCCACGCTTGCGGGCGAAGTCCACCAGCCAACGCATGGCCAGGGCATTACGACGGGACGGACGGACTTC 
GACCGGAACCTGGTAAGTCGCACCACCTACGCGGCGGGACTTCACTTCGACCAGCGGAGCGATGGCATCGAG 
AGCTTTTTCGAAGGTTTCCAGGGGATCGGCCTTGCCGCGTTCCTTCACCTTGTCCAGCGCACCGTAAACGAT 
ACGCTCGGCAACGGCTTTCTTGCCGCTTTCCATCACGTGGTTCATGAACTTGGCCAGGATCTGGCTTCCGTA 
TTTCGGATCAGCCAGCACTTCACGCTTGGCCGCTACACGACGTCTTGGCATTGA