ViewGene
Locus Name:
GeneID:
Location:

GeneID:4977
TrivialName: PA14_29370
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29370
PAO1 Ortholog Locus:
Sequence Length:717
Protein Length:238
Start: 2543825
Stop: 2543109
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID4977 (PA14_29370) replaced by GID7198 (PA14_29375). Homology: gb|AAG06074.1|AE004696_8 (AE004696) two-component response regulator PfeR [Pseudomonas aeruginosa PAO1]
Identities = 233/238 (97%), Positives = 234/238 (98%)
Sequence:
GTGAATCATTCTCATATTTCAATCCCATCTCCCCGCCTGCTGCTGGTCGAAGACGACCCGCGCCTACGCGAG
GATCTCGACGCGCATTTCCGCCGGCGCGGCTTCCGCGTAACCGTCTGCGGCGATGGCTCGCACGGGCTGGAA
GCCGCCGGGCGCGAAGCGTTCGACCTGGTGCTGCTGGACATCATGCTGCCCGGCCTCGACGGTCTGGCCCTG
CTGGAGTCGCTGCGCCGCGAGCAGGCCACGCCGGTGATGCTGATGTCGGCCCTGGGCGCCGAGCAGGATCGC
ATCAGCGGCTTCACCCGCGGCGCCGACGACTACCTGCCGAAGCCGTTCAGCCTGGCCGAGCTGGATGCCCGC
ACCGACGCCCTGCTGCGCCGCGTACGACTGGACCGCCTGCCGTCGCCGCAGCGGCGGGATACCCGGCTGGTG
TTCGACGACCAGGCCCAGGATGTGCTCCAGCAGGGCCTTCCGGCGGGGCTGACGCCATCCGAATACCGCCTC
CTGGCGACGCTCCGCGAACATGCCGGCGAGGCGCTGAGCAAGCCGTTCCTCTACCGGAGCGTGCTGCACCGC
AGCTACACGCGCCTCGACCGCGGTCTCGACGTGCACGTCTGCAACCTGCGGCGCAAGCTCGCCGCGGTCGCC
GTCCGTCACCTGCAGATCCAGGCGGTGCGCGGCCAGGGCTACCTGCTGGTGGAGACGGAACACCCCTGA
Translation:
MNHSHISIPSPRLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLAL
LESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRRVRLDRLPSPQRRDTRLV
FDDQAQDVLQQGLPAGLTPSEYRLLATLREHAGEALSKPFLYRSVLHRSYTRLDRGLDVHVCNLRRKLAAVA
VRHLQIQAVRGQGYLLVETEHP*
AnnotationID:4982GeneID:4977
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 12:12:42
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745,cd00156
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66161.1|AE016244_2 (AE016776) transcriptional regulator PfeR, putative [Pseudomonas
           putida KT2440]
          Length = 230

 Score =  308 bits (789), Expect = 2e-83
 Identities = 157/224 (70%), Positives = 179/224 (79%)








 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and 
a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  182 bits (463), Expect = 3e-47
Identities = 97/230 (42%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  104 bits (260), Expect = 1e-23
Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)






   
Genomic Context:






   
Comment:
GID4977 (PA14_29370) replaced by GID7198 (PA14_29375).


















    ReferenceID:15228




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36339




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4977_cdd.html


    		




 
URL:

















    ReferenceID:36361




  
Author/Investigator(s):
        Dean CR, Poole K.





  
Title:
        Expression of the ferric enterobactin receptor (PfeA) of Pseudomonas aeruginosa: involvement of a two-component regulatory system.




  
PubMed:
        8361354


MedLine:
        




    
Source:
Mol Microbiol. 1993 Jun;8(6):1095-103.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8361354









           
Homologs By Global Alignment 

           

       



     
Gene ID:4977
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7380
                           PA2686_tr
                           translation of PA2686
                           305
                           76.72
                           76.72
                           67
                           1187.0
     

     
     
191241
                           gb|AAA25929.1|
                           (L07739) putative [Pseudomonas aeruginosa]
                           305
                           76.72
                           76.72
                           67
                           1187.0
     

     
     
191240
                           gb|AAG06074.1|AE004696_8
                           (AE004696) two-component response regulator PfeR [Pseudomonas aeruginosa PAO1]
                           305
                           76.72
                           76.72
                           67
                           1187.0
     

     
     
191242
                           gb|AAN66161.1|AE016244_2
                           (AE016776) transcriptional regulator PfeR, putative [Pseudomonas putida KT2440]
                           238
                           66.38
                           76.47
                           8
                           786.0
     

     
     
191244
                           gb|AAG04318.1|AE004527_5
                           (AE004527) two-component response regulator [Pseudomonas aeruginosa PAO1]
                           247
                           52.22
                           62.34
                           17
                           577.0
     

     






      

          
GC ORFID: 47979How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0929Glimmer Score: 

          
Start: 2410101Stop: 2410817

          
Length: 717


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0929 translation of PA0929Homolog Bit Score 229.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2003 (ORF: BLASTX 128.0), t_PA3204 (ORF: BLASTX 127.0), t_PA4776 (ORF: BLASTX 123.0), t_PA2686 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAATCATTCTCATATTTCAATCCCATCTCCCCGCCTGCTGCTGGTCGAAGACGACCCGCGCCTACGCGAG 
GATCTCGACGCGCATTTCCGCCGGCGCGGCTTCCGCGTAACCGTCTGCGGCGATGGCTCGCACGGGCTGGAA 
GCCGCCGGGCGCGAAGCGTTCGACCTGGTGCTGCTGGACATCATGCTGCCCGGCCTCGACGGTCTGGCCCTG 
CTGGAGTCGCTGCGCCGCGAGCAGGCCACGCCGGTGATGCTGATGTCGGCCCTGGGCGCCGAGCAGGATCGC 
ATCAGCGGCTTCACCCGCGGCGCCGACGACTACCTGCCGAAGCCGTTCAGCCTGGCCGAGCTGGATGCCCGC 
ACCGACGCCCTGCTGCGCCGCGTACGACTGGACCGCCTGCCGTCGCCGCAGCGGCGGGATACCCGGCTGGTG 
TTCGACGACCAGGCCCAGGATGTGCTCCAGCAGGGCCTTCCGGCGGGGCTGACGCCATCCGAATACCGCCTC 
CTGGCGACGCTCCGCGAACATGCCGGCGAGGCGCTGAGCAAGCCGTTCCTCTACCGGAGCGTGCTGCACCGC 
AGCTACACGCGCCTCGACCGCGGTCTCGACGTGCACGTCTGCAACCTGCGGCGCAAGCTCGCCGCGGTCGCC 
GTCCGTCACCTGCAGATCCAGGCGGTGCGCGGCCAGGGCTACCTGCTGGTGGAGACGGAACACCCCTGA