ViewGene
Locus Name:
GeneID:
Location:

GeneID:4969
TrivialName: PA14_07440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07440
PAO1 Ortholog Locus:PA0573
Sequence Length:336
Protein Length:111
Start: 638644
Stop: 638309
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03962.1|AE004493_7 (AE004493) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/111 (97%), Positives = 108/111 (97%)
Sequence:
GTGGATTACAGCCCGATAGTCGCCCAGGTCTGGGGCATGCTGACCTGGTTTATCCCGGCAGCCCTGCTGATC
GGCCTGCTCAAATCGCCTTGGGCCAAGGGGCAGATCGGTGAACTGCTGGTGCGCCTGTTCGCCCATTGGCAG
CTGGACAGGCAAACCTACCGCCGCCTGCACAACGTCACCCTGAACACGCCGGACGGCACGACACAGATCGAC
CACGTATTTTTCTCACCCTACGGCATCTTCGTGCTGGAAACGGCAGGTTTCCAGCACCTGCCGATAGGTCTC
TACCGTTGCACCGGCGAGCCGTGCTGCAGGTCACAGGCTTTGGCATGA
Translation:
MDYSPIVAQVWGMLTWFIPAALLIGLLKSPWAKGQIGELLVRLFAHWQLDRQTYRRLHNVTLNTPDGTTQID
HVFFSPYGIFVLETAGFQHLPIGLYRCTGEPCCRSQALA*
AnnotationID:4974GeneID:4969
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0573
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15224




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4969
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7373
                           PA0573_tr
                           translation of PA0573
                           111
                           97.29
                           97.29
                           0
                           588.0
     

     
     
191220
                           gb|AAG03962.1|AE004493_7
                           (AE004493) hypothetical protein PA0573 [Pseudomonas aeruginosa PAO1]
                           111
                           96.39
                           97.29
                           0
                           585.0
     

     






      

          
GC ORFID: 47971How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0573Glimmer Score: 

          
Start: 6439987Stop: 6439652

          
Length: 336


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0573 translation of PA0573Homolog Bit Score 231.0

          
Other Homologs:  t_PA0573 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATTACAGCCCGATAGTCGCCCAGGTCTGGGGCATGCTGACCTGGTTTATCCCGGCAGCCCTGCTGATC 
GGCCTGCTCAAATCGCCTTGGGCCAAGGGGCAGATCGGTGAACTGCTGGTGCGCCTGTTCGCCCATTGGCAG 
CTGGACAGGCAAACCTACCGCCGCCTGCACAACGTCACCCTGAACACGCCGGACGGCACGACACAGATCGAC 
CACGTATTTTTCTCACCCTACGGCATCTTCGTGCTGGAAACGGCAGGTTTCCAGCACCTGCCGATAGGTCTC 
TACCGTTGCACCGGCGAGCCGTGCTGCAGGTCACAGGCTTTGGCATGA