ViewGene

Locus Name:
GeneID:
Location:

GeneID:4969
TrivialName: PA14_07440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07440
PAO1 Ortholog Locus:PA0573
Sequence Length:336
Protein Length:111
Start: 638644
Stop: 638309
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03962.1|AE004493_7 (AE004493) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/111 (97%), Positives = 108/111 (97%)
Sequence:
GTGGATTACAGCCCGATAGTCGCCCAGGTCTGGGGCATGCTGACCTGGTTTATCCCGGCAGCCCTGCTGATC
GGCCTGCTCAAATCGCCTTGGGCCAAGGGGCAGATCGGTGAACTGCTGGTGCGCCTGTTCGCCCATTGGCAG
CTGGACAGGCAAACCTACCGCCGCCTGCACAACGTCACCCTGAACACGCCGGACGGCACGACACAGATCGAC
CACGTATTTTTCTCACCCTACGGCATCTTCGTGCTGGAAACGGCAGGTTTCCAGCACCTGCCGATAGGTCTC
TACCGTTGCACCGGCGAGCCGTGCTGCAGGTCACAGGCTTTGGCATGA
Translation:
MDYSPIVAQVWGMLTWFIPAALLIGLLKSPWAKGQIGELLVRLFAHWQLDRQTYRRLHNVTLNTPDGTTQID
HVFFSPYGIFVLETAGFQHLPIGLYRCTGEPCCRSQALA*
AnnotationID:4974GeneID:4969
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0573
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15224
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27079
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4969

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7373 PA0573_tr translation of PA0573 111 97.29 97.29 0 588.0
191220 gb|AAG03962.1|AE004493_7 (AE004493) hypothetical protein PA0573 [Pseudomonas aeruginosa PAO1] 111 96.39 97.29 0 585.0
GC ORFID: 47971How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0573Glimmer Score:
Start: 6439987Stop: 6439652
Length: 336
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0573 translation of PA0573Homolog Bit Score 231.0
Other Homologs: t_PA0573 (ORF: GLIMMER)
GC ORF Sequence
GTGGATTACAGCCCGATAGTCGCCCAGGTCTGGGGCATGCTGACCTGGTTTATCCCGGCAGCCCTGCTGATC
GGCCTGCTCAAATCGCCTTGGGCCAAGGGGCAGATCGGTGAACTGCTGGTGCGCCTGTTCGCCCATTGGCAG
CTGGACAGGCAAACCTACCGCCGCCTGCACAACGTCACCCTGAACACGCCGGACGGCACGACACAGATCGAC
CACGTATTTTTCTCACCCTACGGCATCTTCGTGCTGGAAACGGCAGGTTTCCAGCACCTGCCGATAGGTCTC
TACCGTTGCACCGGCGAGCCGTGCTGCAGGTCACAGGCTTTGGCATGA