ViewGene
Locus Name:
GeneID:
Location:

GeneID:4950
TrivialName: PA14_62980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62980
PAO1 Ortholog Locus:
Sequence Length:705
Protein Length:234
Start: 5620396
Stop: 5621100
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN78518.1|AE016755_18 (AE016755) Putative glutamate dehydrogenase [Escherichia coli CFT073]
Identities = 92/213 (43%), Positives = 124/213 (58%)
Sequence:
CTGGTGCTCACCGTCGACTTCGGCGATCTCGATCACCGACACGTCGAAGGTACCGCCGCCCAGGTCATAGAC
GATCACGGTGTGGTCGCCCTTGGCCTTGTCCAGGCCGTAGGCCAGCGCCGCCGCGGTCGGCTCGTTGATGAT
CCGCTTGACGTCGAGGCCGGCGATGCGGCCGGCGTCCTTGGTGGCCTGGCGCTGGCTGTCGTTGAAGTAGGC
CGGAACGGTGATCACCGCTTCGGTGACCGGCTCGCCGAGGTAGTCTTCGGCGGTCTTCTTCATTTTCTTCAG
CACTTCGGCGGAAATCTGCGGAGGCGCCATCTTCTGGCCCTTCACTTCCACCCAGGCGTCGCCGTTGTCGGC
CTTGACGATGCTGTACGGCACCATCTGGATGTCTTTCTGTACCACGTTCTCTTCGAAGCGACGGCCGATCAG
GCGCTTCACCGCATACAGGGTGTTCTGCGGGTTGGTGACCGCCTGGCGCTTGGCCGGCTGGCCCACCAGGGT
TTCGCCATCGTTGGTGTAGGCGATGATCGAGGGGGTGGTACGCGCGCCCTCGGCGTTCTCGATGACCTTGAC
GTTACCGTTCTCCAGGATAGCCACGCAGGAGTTGGTGGTACCCAGGTCGATGCCAATGATTTTGCCCATATT
CACTCTCCAGAAACTTTGATTCCGTGCGACCCGCCCGTGGGTCTCGTGCTCGGTTGA
Translation:
MVLTVDFGDLDHRHVEGTAAQVIDDHGVVALGLVQAVGQRRRGRLVDDPLDVEAGDAAGVLGGLALAVVEVG
RNGDHRFGDRLAEVVFGGLLHFLQHFGGNLRRRHLLALHFHPGVAVVGLDDAVRHHLDVFLYHVLFEATADQ
ALHRIQGVLRVGDRLALGRLAHQGFAIVGVGDDRGGGTRALGVLDDLDVTVLQDSHAGVGGTQVDANDFAHI
HSPETLIPCDPPVGLVLG*
AnnotationID:4955GeneID:4950
AnnotatorUID: diggins
Modification Date/Time: 2005-05-23 14:02:13
Gene Name:
Confidence Code:3
GeneProduct:putative glutamate dehydrogenase
Cell Localization:()
Synonyms:gdhA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN78518.1|AE016755_18 (AE016755) Putative glutamate dehydrogenase [Escherichia coli
           CFT073]
          Length = 678

 Score =  166 bits (420), Expect = 1e-40
 Identities = 92/213 (43%), Positives = 124/213 (58%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15220




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38161




  
Author/Investigator(s):
        McPherson MJ, Wootton JC.





  
Title:
        Complete nucleotide sequence of the Escherichia coli gdhA gene.




  
PubMed:
        6308576


MedLine:
        




    
Source:
Nucleic Acids Res. 1983 Aug 11;11(15):5257-66.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6308576









           
Homologs By Global Alignment 

           

       



     
Gene ID:4950
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
191008
                           gb|AAN78518.1|AE016755_18
                           (AE016755) Putative glutamate dehydrogenase [Escherichia coli CFT073]
                           689
                           13.49
                           18.28
                           466
                           405.0
     

     
     
191009
                           gb|AAG23119.1|
                           (AF069527) putative glutamate dehydrogenase [Haloferax mediterranei]
                           992
                           9.67
                           12.09
                           791
                           315.0
     

     






      

          
GC ORFID: 47952How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold4_revised_gene5585Glimmer Score: 

          
Start: 4884076Stop: 4884780

          
Length: 705


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold4_revised_gene5585 related to: gi|10798847|gb|AAG23119.1| (AF069527) putative glutamate dehydrogenase [Haloferax mediterranei]Homolog Bit Score 234.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGTGCTCACCGTCGACTTCGGCGATCTCGATCACCGACACGTCGAAGGTACCGCCGCCCAGGTCATAGAC 
GATCACGGTGTGGTCGCCCTTGGCCTTGTCCAGGCCGTAGGCCAGCGCCGCCGCGGTCGGCTCGTTGATGAT 
CCGCTTGACGTCGAGGCCGGCGATGCGGCCGGCGTCCTTGGTGGCCTGGCGCTGGCTGTCGTTGAAGTAGGC 
CGGAACGGTGATCACCGCTTCGGTGACCGGCTCGCCGAGGTAGTCTTCGGCGGTCTTCTTCATTTTCTTCAG 
CACTTCGGCGGAAATCTGCGGAGGCGCCATCTTCTGGCCCTTCACTTCCACCCAGGCGTCGCCGTTGTCGGC 
CTTGACGATGCTGTACGGCACCATCTGGATGTCTTTCTGTACCACGTTCTCTTCGAAGCGACGGCCGATCAG 
GCGCTTCACCGCATACAGGGTGTTCTGCGGGTTGGTGACCGCCTGGCGCTTGGCCGGCTGGCCCACCAGGGT 
TTCGCCATCGTTGGTGTAGGCGATGATCGAGGGGGTGGTACGCGCGCCCTCGGCGTTCTCGATGACCTTGAC 
GTTACCGTTCTCCAGGATAGCCACGCAGGAGTTGGTGGTACCCAGGTCGATGCCAATGATTTTGCCCATATT 
CACTCTCCAGAAACTTTGATTCCGTGCGACCCGCCCGTGGGTCTCGTGCTCGGTTGA