ViewGene
Locus Name:
GeneID:
Location:

GeneID:4935
TrivialName: PA14_17490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17490
PAO1 Ortholog Locus:PA3621
Sequence Length:324
Protein Length:107
Start: 1500850
Stop: 1500527
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07009.1|AE004782_7 (AE004782) ferredoxin I [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGACCTTCGTCGTCACCGACAACTGCATCAAGTGCAAATACACCGACTGCGTGGAAGTCTGCCCGGTAGAC
TGCTTCTACGAAGGACCCAACTTCCTGGTCATCCATCCGGACGAGTGCATCGACTGCGCCCTGTGCGAGCCC
GAATGTCCGGCCCAGGCGATTTTCTCCGAAGACGAAGTGCCGGAGAACATGCAGGAATTCATCGAGCTGAAC
AGCGAGCTGGCGGAAGTCTGGCCGAACATCACCGAGAAGAAGGATGCCCTGCCCGACGCTGAGGAATGGGAC
GGCGTCGCCGGCAAGCTCCAGCATCTGGAGCGCTGA
Translation:
MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPENMQEFIELN
SELAEVWPNITEKKDALPDAEEWDGVAGKLQHLER*
AnnotationID:4940GeneID:4935
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 18:06:41
Gene Name:fdxA
Confidence Code:2
GeneProduct: ferredoxin I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1146
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA22125.1| (J03521) ferredoxin I [Azotobacter vinelandii]
          Length = 107

 Score =  224 bits (571), Expect = 7e-59
 Identities = 100/107 (93%), Positives = 104/107 (97%)

>gb|AAN30666.1|AE014467_11 (AE014467) ferredoxin A [Brucella suis 1330]
          Length = 112

 Score =  164 bits (414), Expect = 1e-40
 Identities = 73/103 (70%), Positives = 87/103 (84%), Gaps = 2/103 (1%)






 
Structural Features:
COG1146, Ferredoxin [Energy production and conversion]
CD-Length = 68 residues,  89.7% aligned
Score = 50.9 bits (121), Expect = 4e-08
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 6/63 (9%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9870




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27011




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31921




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4935_cdd.html


    		




 
URL:

















    ReferenceID:34170




  
Author/Investigator(s):
        Heltzel A, Smith ET, Zhou ZH, Blamey JM, Adams MW.





  
Title:
        Cloning, expression, and molecular characterization of the gene encoding an extremely thermostable [4Fe-4S] ferredoxin from the hyperthermophilic archaeon Pyrococcus furiosus.




  
PubMed:
        8045914


MedLine:
        




    
Source:
J Bacteriol. 1994 Aug;176(15):4790-3.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8045914

















    ReferenceID:34171




  
Author/Investigator(s):
        Aono S, Nakamura S, Aono R, Okura I.





  
Title:
        Cloning and expression of the gene encoding the 7Fe type ferredoxin from a thermophilic hydrogen oxidizing bacterium, Bacillus schlegelii.




  
PubMed:
        8003034


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 1994 Jun 15;201(2):938-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8003034

















    ReferenceID:34172




  
Author/Investigator(s):
        Clements AP, Ferry JG.





  
Title:
        Cloning, nucleotide sequence, and transcriptional analyses of the gene encoding a ferredoxin from Methanosarcina thermophila.




  
PubMed:
        1379583


MedLine:
        




    
Source:
J Bacteriol. 1992 Aug;174(16):5244-50.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1379583

















    ReferenceID:34173




  
Author/Investigator(s):
        Duport C, Jouanneau Y, Vignais PM.





  
Title:
        Transcriptional analysis and promoter mapping of the fdxA gene which encodes the 7Fe ferredoxin (FdII) of Rhodobacter capsulatus.




  
PubMed:
        1736101


MedLine:
        




    
Source:
Mol Gen Genet. 1992 Jan;231(2):323-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1736101

















    ReferenceID:34174




  
Author/Investigator(s):
        Donadio S, Hutchinson CR.





  
Title:
        Cloning and characterization of the Saccharopolyspora erythraea fdxA gene encoding ferredoxin.




  
PubMed:
        2055472


MedLine:
        




    
Source:
Gene. 1991 Apr;100:231-5






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2055472

















    ReferenceID:34175




  
Author/Investigator(s):
        Donadio S, Hutchinson CR.





  
Title:
        Cloning and characterization of the Saccharopolyspora erythraea fdxA gene encoding ferredoxin.




  
PubMed:
        2055472


MedLine:
        




    
Source:
Gene. 1991 Apr;100:231-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2055472

















    ReferenceID:34176




  
Author/Investigator(s):
        Morgan TV, Lundell DJ, Burgess BK.





  
Title:
        Azotobacter vinelandii ferredoxin I: cloning, sequencing, and mutant analysis.




  
PubMed:
        2826477


MedLine:
        




    
Source:
J Biol Chem. 1988 Jan 25;263(3):1370-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2826477

















    ReferenceID:34177




  
Author/Investigator(s):
        Vollack KU, Xie J, Hartig E, Romling U, Zumft WG.





  
Title:
        Localization of denitrification genes on the chromosomal map of Pseudomonas aeruginosa.




  
PubMed:
        9493381


MedLine:
        




    
Source:
Microbiology. 1998 Feb;144 ( Pt 2):441-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9493381









           
Homologs By Global Alignment 

           

       



     
Gene ID:4935
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7338
                           PA3621_tr
                           translation of PA3621
                           107
                           99.99
                           99.99
                           0
                           600.0
     

     
     
190850
                           gb|AAG07009.1|AE004782_7
                           (AE004782) ferredoxin I [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           600.0
     

     
     
190854
                           gb|AAF89693.1|AF170100_1
                           (AF170100) ferredoxin A [Pseudomonas aeruginosa]
                           107
                           94.39
                           96.26
                           0
                           560.0
     

     
     
190851
                           gb|AAA22125.1|
                           (J03521) ferredoxin I [Azotobacter vinelandii]
                           107
                           93.45
                           97.19
                           0
                           571.0
     

     
     
190852
                           gb|AAM22287.1|
                           (AF421351) ferredoxin A [Azotobacter vinelandii]
                           107
                           92.52
                           96.26
                           0
                           566.0
     

     






      

          
GC ORFID: 47937How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3621Glimmer Score: 

          
Start: 3453087Stop: 3453410

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3621 translation of PA3621Homolog Bit Score 235.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4780 (ORF: BLASTX 208.0), t_PA2715 (ORF: BLASTX 159.0), t_PA3621 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTCGTCGTCACCGACAACTGCATCAAGTGCAAATACACCGACTGCGTGGAAGTCTGCCCGGTAGAC 
TGCTTCTACGAAGGACCCAACTTCCTGGTCATCCATCCGGACGAGTGCATCGACTGCGCCCTGTGCGAGCCC 
GAATGTCCGGCCCAGGCGATTTTCTCCGAAGACGAAGTGCCGGAGAACATGCAGGAATTCATCGAGCTGAAC 
AGCGAGCTGGCGGAAGTCTGGCCGAACATCACCGAGAAGAAGGATGCCCTGCCCGACGCTGAGGAATGGGAC 
GGCGTCGCCGGCAAGCTCCAGCATCTGGAGCGCTGA