ViewGene
Locus Name:
GeneID:
Location:

GeneID:4914
TrivialName: PA14_39500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39500
PAO1 Ortholog Locus:PA1934
Sequence Length:381
Protein Length:126
Start: 3516510
Stop: 3516130
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05322.1|AE004620_1 (AE004620) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/126 (97%), Positives = 126/126 (100%)
Sequence:
ATGAAGAACGCAATGGCCCTGACCCTGGCCGGCCTGCTGGCCGCTCCTTCCCTCGGCTTCGCCGCCGCGCCG
GACGCAGTGATGGTCTTCGCCCGCCAGGGCGACAAGGGCAGCGTATCCGTCGGCGACAAGCACTTCCGCACC
CAGGCCTTCAAGGTCCGCCTGGTGAATGCGGCGAAGAGCGAGATCAGCCTGAAGAACAGCTGCCTGGTGGCG
CAGTCCGCCGCCGGCCAGTCCTTCAGGCTGGATACCGTGGACGAGGAACTCACCGCCGAGACCCTCAAGCCG
GGGGCCACCGTCGAAGGCGAGGCGATCTTCGCCTCCGAGGACGACGCGGTGTACGGCGCATCGCTGGTCAGG
CTGAGCGACCGGTGCAAGTAG
Translation:
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVA
QSAAGQSFRLDTVDEELTAETLKPGATVEGEAIFASEDDAVYGASLVRLSDRCK*
AnnotationID:4919GeneID:4914
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1934
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9828




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26969




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4914
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7316
                           PA1934_tr
                           translation of PA1934
                           126
                           97.61
                           99.99
                           0
                           606.0
     

     
     
190410
                           gb|AAG05322.1|AE004620_1
                           (AE004620) hypothetical protein PA1934 [Pseudomonas aeruginosa PAO1]
                           126
                           97.61
                           99.99
                           0
                           606.0
     

     






      

          
GC ORFID: 47916How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1934Glimmer Score: 

          
Start: 1437401Stop: 1437781

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1934 translation of PA1934Homolog Bit Score 238.0

          
Other Homologs:  t_PA1934 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAACGCAATGGCCCTGACCCTGGCCGGCCTGCTGGCCGCTCCTTCCCTCGGCTTCGCCGCCGCGCCG 
GACGCAGTGATGGTCTTCGCCCGCCAGGGCGACAAGGGCAGCGTATCCGTCGGCGACAAGCACTTCCGCACC 
CAGGCCTTCAAGGTCCGCCTGGTGAATGCGGCGAAGAGCGAGATCAGCCTGAAGAACAGCTGCCTGGTGGCG 
CAGTCCGCCGCCGGCCAGTCCTTCAGGCTGGATACCGTGGACGAGGAACTCACCGCCGAGACCCTCAAGCCG 
GGGGCCACCGTCGAAGGCGAGGCGATCTTCGCCTCCGAGGACGACGCGGTGTACGGCGCATCGCTGGTCAGG 
CTGAGCGACCGGTGCAAGTAG