ViewGene

Locus Name:
GeneID:
Location:

GeneID:4914
TrivialName: PA14_39500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39500
PAO1 Ortholog Locus:PA1934
Sequence Length:381
Protein Length:126
Start: 3516510
Stop: 3516130
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05322.1|AE004620_1 (AE004620) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/126 (97%), Positives = 126/126 (100%)
Sequence:
ATGAAGAACGCAATGGCCCTGACCCTGGCCGGCCTGCTGGCCGCTCCTTCCCTCGGCTTCGCCGCCGCGCCG
GACGCAGTGATGGTCTTCGCCCGCCAGGGCGACAAGGGCAGCGTATCCGTCGGCGACAAGCACTTCCGCACC
CAGGCCTTCAAGGTCCGCCTGGTGAATGCGGCGAAGAGCGAGATCAGCCTGAAGAACAGCTGCCTGGTGGCG
CAGTCCGCCGCCGGCCAGTCCTTCAGGCTGGATACCGTGGACGAGGAACTCACCGCCGAGACCCTCAAGCCG
GGGGCCACCGTCGAAGGCGAGGCGATCTTCGCCTCCGAGGACGACGCGGTGTACGGCGCATCGCTGGTCAGG
CTGAGCGACCGGTGCAAGTAG
Translation:
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVA
QSAAGQSFRLDTVDEELTAETLKPGATVEGEAIFASEDDAVYGASLVRLSDRCK*
AnnotationID:4919GeneID:4914
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1934
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9828
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26969
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4914

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7316 PA1934_tr translation of PA1934 126 97.61 99.99 0 606.0
190410 gb|AAG05322.1|AE004620_1 (AE004620) hypothetical protein PA1934 [Pseudomonas aeruginosa PAO1] 126 97.61 99.99 0 606.0
GC ORFID: 47916How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1934Glimmer Score:
Start: 1437401Stop: 1437781
Length: 381
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1934 translation of PA1934Homolog Bit Score 238.0
Other Homologs: t_PA1934 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAACGCAATGGCCCTGACCCTGGCCGGCCTGCTGGCCGCTCCTTCCCTCGGCTTCGCCGCCGCGCCG
GACGCAGTGATGGTCTTCGCCCGCCAGGGCGACAAGGGCAGCGTATCCGTCGGCGACAAGCACTTCCGCACC
CAGGCCTTCAAGGTCCGCCTGGTGAATGCGGCGAAGAGCGAGATCAGCCTGAAGAACAGCTGCCTGGTGGCG
CAGTCCGCCGCCGGCCAGTCCTTCAGGCTGGATACCGTGGACGAGGAACTCACCGCCGAGACCCTCAAGCCG
GGGGCCACCGTCGAAGGCGAGGCGATCTTCGCCTCCGAGGACGACGCGGTGTACGGCGCATCGCTGGTCAGG
CTGAGCGACCGGTGCAAGTAG