ViewGene
Locus Name:
GeneID:
Location:

GeneID:4913
TrivialName: PA14_49430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49430
PAO1 Ortholog Locus:
Sequence Length:906
Protein Length:301
Start: 4393194
Stop: 4394099
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA74222.1| (M38698) lcrC gene product [Rhizobium sp.]
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
Sequence:
CTGTCCGCTGCTGTTGATTCTGGCCGACCGGGACGCCCGCGCCCCGGCCCGCAGGAAATAAGCGCCTCAGCC
CTCTCCGACGAACAGGTAGCCCTTGCTGCGCACGGTCTTGATCAGCCGCGGGTGCATCGGGTCATCGCCGAT
CTTCGGGCGGATCCGCGAGATGCGCACGTCGATGGAGCGGTCCTGGCCGTCGTACTCGATGCCGCGCAGGGC
GTTGAAGATCTCCTCGCGGGAGAGAATCCGCCCGGCGTTCGCCGCCAGCAGCCAGAGCAGGTCGAATTCGGC
GCTGGTCAGCTCGATGGTGGTCCCGTCCAGCCAGGCCTCGCGCATCGCGTTGTCGATCACCAGGCGACCGAA
CGCCAGGCGTTTGCTGTCCGCCGCCGGGGCGCCCGCTTCCGGCGCCTCGCTGCGCCGCAACAGGGCACGGAT
GCGCGCCAGCAGCACACGCGGGCGCACCGGCTTGCACACGTAGTCGTCGGCGCCCATCTCCAGGCCGAGCAC
CTCGTCCATGTCGTCGGTGCGCGCGGTGAGCATCAGGATCGGACCGTCGAACTGCGGACGCACCTGGCGGCA
GATGGACAGGCCGTCCTCGCCCGGCAGCATCAGGTCGAGCACCACCAGGTCCGGGCGTTCGGCGAGGATACG
CGCCGCCGCCAGTGCGCCGTTGGCTTCGATGTCGACCTTCAGGCCGTTGCCTTCCAGGTATTCCCGGGTCAG
CTCGGCCAGGCGTCGATCGTCCTCGACGATCAGGATGCGCCAGGCTTCTTGCTCCACACAGCCTCCTCGTAT
CGCGGTCCCGGAGCCGCCGCGCGGCCCCCTCAGAGCGGCCCGCATTGTAGCCAATACGGGGGCCGCGCGGCA
GCACGCGAGGAACATCTTGCAAACACTACATATTGTGGGTAG
Translation:
MSAAVDSGRPGRPRPGPQEISASALSDEQVALAAHGLDQPRVHRVIADLRADPRDAHVDGAVLAVVLDAAQG
VEDLLAGENPPGVRRQQPEQVEFGAGQLDGGPVQPGLAHRVVDHQATERQAFAVRRRGARFRRLAAPQQGTD
ARQQHTRAHRLAHVVVGAHLQAEHLVHVVGARGEHQDRTVELRTHLAADGQAVLARQHQVEHHQVRAFGEDT
RRRQCAVGFDVDLQAVAFQVFPGQLGQASIVLDDQDAPGFLLHTASSYRGPGAAARPPQSGPHCSQYGGRAA
AREEHLANTTYCG*
AnnotationID:4918GeneID:4913
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15214




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26967




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 47915How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold5_revised_gene5942Glimmer Score: 

          
Start: 560714Stop: 559809

          
Length: 906


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold5_revised_gene5942 related to: gi|281711|pir||S28675 hypothetical protein lcrC - Rhizobium sp. (strain IC3342) gb|AAA74222.1| (M38698) lcrC gene product [Rhizobium sp.]Homolog Bit Score 239.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGTCCGCTGCTGTTGATTCTGGCCGACCGGGACGCCCGCGCCCCGGCCCGCAGGAAATAAGCGCCTCAGCC 
CTCTCCGACGAACAGGTAGCCCTTGCTGCGCACGGTCTTGATCAGCCGCGGGTGCATCGGGTCATCGCCGAT 
CTTCGGGCGGATCCGCGAGATGCGCACGTCGATGGAGCGGTCCTGGCCGTCGTACTCGATGCCGCGCAGGGC 
GTTGAAGATCTCCTCGCGGGAGAGAATCCGCCCGGCGTTCGCCGCCAGCAGCCAGAGCAGGTCGAATTCGGC 
GCTGGTCAGCTCGATGGTGGTCCCGTCCAGCCAGGCCTCGCGCATCGCGTTGTCGATCACCAGGCGACCGAA 
CGCCAGGCGTTTGCTGTCCGCCGCCGGGGCGCCCGCTTCCGGCGCCTCGCTGCGCCGCAACAGGGCACGGAT 
GCGCGCCAGCAGCACACGCGGGCGCACCGGCTTGCACACGTAGTCGTCGGCGCCCATCTCCAGGCCGAGCAC 
CTCGTCCATGTCGTCGGTGCGCGCGGTGAGCATCAGGATCGGACCGTCGAACTGCGGACGCACCTGGCGGCA 
GATGGACAGGCCGTCCTCGCCCGGCAGCATCAGGTCGAGCACCACCAGGTCCGGGCGTTCGGCGAGGATACG 
CGCCGCCGCCAGTGCGCCGTTGGCTTCGATGTCGACCTTCAGGCCGTTGCCTTCCAGGTATTCCCGGGTCAG 
CTCGGCCAGGCGTCGATCGTCCTCGACGATCAGGATGCGCCAGGCTTCTTGCTCCACACAGCCTCCTCGTAT 
CGCGGTCCCGGAGCCGCCGCGCGGCCCCCTCAGAGCGGCCCGCATTGTAGCCAATACGGGGGCCGCGCGGCA 
GCACGCGAGGAACATCTTGCAAACACTACATATTGTGGGTAG