ViewGene
Locus Name:
GeneID:
Location:

GeneID:4884
TrivialName: PA14_26990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26990
PAO1 Ortholog Locus:PA2868
Sequence Length:360
Protein Length:119
Start: 2348175
Stop: 2347816
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06256.1|AE004713_5 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
ATGGGCAAACGTCATCCCAACCTGCTCGCCTGGCAATGGCGCGGCTATGCCGCCAACCACCGCAACCCGACC
AACCTGGTCCTGCACCTGATCGCCGTGCCGCTGTTCATCGTCGCTGCGATCCTGCTGCTCGGCGGCCTGTTC
GGCCTGGACCTGCTGCAGGTGGTACTCGGTGTCATCGGCATCGGTGCCGGCCTGGCGATCCAGGCCAAGGGA
CACGCGCTGGAGGAACAGGCACCCGAGCCATTCAGCGATCGGCGCGACGCTGTCAGTCGCCTGCTCGTCGAG
CAGTTCGTCACCTTCCCCCGCTTCGTCCTCAGCGGCGCCTGGTGGCGGGCCTGGCGCGAACGGCATAAGTGA
Translation:
MGKRHPNLLAWQWRGYAANHRNPTNLVLHLIAVPLFIVAAILLLGGLFGLDLLQVVLGVIGIGAGLAIQAKG
HALEEQAPEPFSDRRDAVSRLLVEQFVTFPRFVLSGAWWRAWRERHK*
AnnotationID:4889GeneID:4884
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2868
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9768




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26909




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36175




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4884_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4884
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7265
                           PA2868_tr
                           translation of PA2868
                           119
                           99.99
                           99.99
                           0
                           626.0
     

     
     
189395
                           gb|AAG06256.1|AE004713_5
                           (AE004713) hypothetical protein PA2868 [Pseudomonas aeruginosa PAO1]
                           119
                           99.99
                           99.99
                           0
                           626.0
     

     
     
189396
                           gb|AAN67922.1|AE016424_8
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           122
                           68.03
                           79.50
                           3
                           459.0
     

     






      

          
GC ORFID: 47886How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2868Glimmer Score: 

          
Start: 2605751Stop: 2606110

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2868 translation of PA2868Homolog Bit Score 245.0

          
Other Homologs:  t_PA2868 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAAACGTCATCCCAACCTGCTCGCCTGGCAATGGCGCGGCTATGCCGCCAACCACCGCAACCCGACC 
AACCTGGTCCTGCACCTGATCGCCGTGCCGCTGTTCATCGTCGCTGCGATCCTGCTGCTCGGCGGCCTGTTC 
GGCCTGGACCTGCTGCAGGTGGTACTCGGTGTCATCGGCATCGGTGCCGGCCTGGCGATCCAGGCCAAGGGA 
CACGCGCTGGAGGAACAGGCACCCGAGCCATTCAGCGATCGGCGCGACGCTGTCAGTCGCCTGCTCGTCGAG 
CAGTTCGTCACCTTCCCCCGCTTCGTCCTCAGCGGCGCCTGGTGGCGGGCCTGGCGCGAACGGCATAAGTGA