ViewGene
Locus Name:
GeneID:
Location:

GeneID:4871
TrivialName: PA14_14970
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14970
PAO1 Ortholog Locus:
Sequence Length:618
Protein Length:205
Start: 1271156
Stop: 1271772
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID4871 (PA14_14970) and GID6467 (PA14_14980) replaced by GID7407 (PA14_14975). Homology: gb|AAG07183.1|AE004798_6 (AE004798) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/126 (99%), Positives = 125/126 (99%)
Sequence:
ATGGGACTGCTCGATTCGATTCTCGGTTCGGCGCTGGGTGGCTCTGAAGGACAGGGAGGTGCTCGCGATCCG
AAAGTGGCCCTGTTGATCGGGCTGGTGACCATGCTGATGTCGCGCCAGGGCGGTGCGGCACAGGGCGGTGGC
GATGGCGGTGGTCTGCTCGGTTCGCTGGGCAGCATCCTTGGTGGCGCTGGCGGCGGGGCTGCGAGCGGCGGG
CTGGGTGGCGTCCtCGGCGATCTGCTCGGTGGCGCCGCGGGCGGTGccGGGCAGGCGGCGCCGGGCGTGGAG
GCCGGCTCCCTGGGCGGACTCGGCGGATTGTTCCAGATGCTCCAGAACGCAGGCCTGGGCGATGCCCTGAAT
TCCTGGATCGGCGCTGGggCCGAACCAGTCGGTGTCGGCGGCGGACATTTCCCGGGTCTTCGGCGACGGTCA
ATTGCAGCAACTGGCGGACTCCGCCGGAGTCAGCCAGGGCGAGGCGGCCGAACACCTGAGCAGCCTGCTGCC
GGAACTGGTCAACAAGCTGACGCCGGACGGCCAGGCGCCGCAGGGCGACCTGGACATCGGTTCGCTGCTGGC
GCGCTTCAGCTAAGGTTTTCCCGTCGATGCGGGAGCGGATAG
Translation:
MGLLDSILGSALGGSEGQGGARDPKVALLIGLVTMLMSRQGGAAQGGGDGGGLLGSLGSILGGAGGGAASGG
LGGVLGDLLGGAAGGAGQAAPGVEAGSLGGLGGLFQMLQNAGLGDALNSWIGAGAEPVGVGGGHFPGLRRRS
IAATGGLRRSQPGRGGRTPEQPAAGTGQQADAGRPGAAGRPGHRFAAGALQLRFSRRCGSG*
AnnotationID:4876GeneID:4871
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 15:03:31
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID4871 (PA14_14970) and GID6467 (PA14_14980) replaced by GID7407 (PA14_14975).



















    ReferenceID:9742




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26883




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31763




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4871_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4871
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7251
                           PA3796_tr
                           translation of PA3796
                           223
                           62.78
                           66.81
                           46
                           628.0
     

     
     
189259
                           gb|AAG07183.1|AE004798_6
                           (AE004798) hypothetical protein PA3796 [Pseudomonas aeruginosa PAO1]
                           223
                           62.78
                           66.81
                           46
                           628.0
     

     
     
189260
                           emb|CAD16471.1|
                           (AL646071) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           231
                           32.90
                           42.42
                           70
                           258.0
     

     






      

          
GC ORFID: 47873How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3796Glimmer Score: 

          
Start: 3682782Stop: 3682165

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3796 translation of PA3796Homolog Bit Score 247.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGGACTGCTCGATTCGATTCTCGGTTCGGCGCTGGGTGGCTCTGAAGGACAGGGAGGTGCTCGCGATCCG 
AAAGTGGCCCTGTTGATCGGGCTGGTGACCATGCTGATGTCGCGCCAGGGCGGTGCGGCACAGGGCGGTGGC 
GATGGCGGTGGTCTGCTCGGTTCGCTGGGCAGCATCCTTGGTGGCGCTGGCGGCGGGGCTGCGAGCGGCGGG 
CTGGGTGGCGTCCtCGGCGATCTGCTCGGTGGCGCCGCGGGCGGTGccGGGCAGGCGGCGCCGGGCGTGGAG 
GCCGGCTCCCTGGGCGGACTCGGCGGATTGTTCCAGATGCTCCAGAACGCAGGCCTGGGCGATGCCCTGAAT 
TCCTGGATCGGCGCTGGggCCGAACCAGTCGGTGTCGGCGGCGGACATTTCCCGGGTCTTCGGCGACGGTCA 
ATTGCAGCAACTGGCGGACTCCGCCGGAGTCAGCCAGGGCGAGGCGGCCGAACACCTGAGCAGCCTGCTGCC 
GGAACTGGTCAACAAGCTGACGCCGGACGGCCAGGCGCCGCAGGGCGACCTGGACATCGGTTCGCTGCTGGC 
GCGCTTCAGCTAAGGTTTTCCCGTCGATGCGGGAGCGGATAG