ViewGene
Locus Name:
GeneID:
Location:

GeneID:4870
TrivialName: PA14_52510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52510
PAO1 Ortholog Locus:PA0908
Sequence Length:375
Protein Length:124
Start: 4658181
Stop: 4657807
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04297.1|AE004525_5 (AE004525) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 122/124 (98%), Positives = 123/124 (99%)
Sequence:
ATGTCCGAGCCAAGCTCTGCGGCCTCCGCCGCCAGCGCAATGGCTGGCGGCGGCCTGGCCATGTACCTGCCG
GGTATCGATGGCAACGCCTTGCTGGGAGGCTTCGGCGGCGCCATCTTCTTTGTCGTGTTCGCCCGTGACTAC
AACGCCCTGACCCGCCTCGGCTATCTGCTGGTGTCCTGGGTCGGCGGCTATTACGCCGGAATCGAGGCGCTC
GGCCGCGGGTTGACCCAGACCAGCGGCATGGCCGCCTTCGTCGCCGCGACCCTGTGCGTGACCGGCGGCATC
GGCATGCTCGAGTGGATGCGTGGCGGTGAACTGCCCAACTGGATGCGCGGGCTGTTGCGCCGCCGGGGAGGC
AAGTCCGATGGTTGA
Translation:
MSEPSSAASAASAMAGGGLAMYLPGIDGNALLGGFGGAIFFVVFARDYNALTRLGYLLVSWVGGYYAGIEAL
GRGLTQTSGMAAFVAATLCVTGGIGMLEWMRGGELPNWMRGLLRRRGGKSDG*
AnnotationID:4875GeneID:4870
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0908
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9740




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26881




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4870
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7250
                           PA0908_tr
                           translation of PA0908
                           124
                           98.38
                           99.19
                           0
                           630.0
     

     
     
189258
                           gb|AAG04297.1|AE004525_5
                           (AE004525) hypothetical protein PA0908 [Pseudomonas aeruginosa PAO1]
                           124
                           98.38
                           99.19
                           0
                           630.0
     

     






      

          
GC ORFID: 47872How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0908Glimmer Score: 

          
Start: 295726Stop: 296100

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0908 translation of PA0908Homolog Bit Score 247.0

          
Other Homologs:  t_PA0908 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAGCCAAGCTCTGCGGCCTCCGCCGCCAGCGCAATGGCTGGCGGCGGCCTGGCCATGTACCTGCCG 
GGTATCGATGGCAACGCCTTGCTGGGAGGCTTCGGCGGCGCCATCTTCTTTGTCGTGTTCGCCCGTGACTAC 
AACGCCCTGACCCGCCTCGGCTATCTGCTGGTGTCCTGGGTCGGCGGCTATTACGCCGGAATCGAGGCGCTC 
GGCCGCGGGTTGACCCAGACCAGCGGCATGGCCGCCTTCGTCGCCGCGACCCTGTGCGTGACCGGCGGCATC 
GGCATGCTCGAGTGGATGCGTGGCGGTGAACTGCCCAACTGGATGCGCGGGCTGTTGCGCCGCCGGGGAGGC 
AAGTCCGATGGTTGA