ViewGene
Locus Name:
GeneID:
Location:

GeneID:4862
TrivialName: PA14_51940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51940
PAO1 Ortholog Locus:PA0952
Sequence Length:384
Protein Length:127
Start: 4611911
Stop: 4612294
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04341.1|AE004529_7 (AE004529) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/127 (100%), Positives = 127/127 (100%)
Sequence:
ATGAAAGACCATCTGATCGGAAGCGTCCCCGCACACCTGGTGGATGCCGCACGCCCGACCCTGACAGCCCAC
GAGGGCCTGGTCGCGGACTACAACATTGCCGCCTGGCTACATCTTCCGGATGCCTGCGACCTGCTGGTGTCA
CTGGTGGTCAGCTATCTGGATGGCGGGCGCCAGCGCGAAGTGGCGGTGGATCACGGACGAATCGACCGCCAG
CAACGCATCCTGCTTTCCGGCATTGCCCGCCTGCCCGTACGGCAGAAAGTGGAGAACATGCAGGTACGCCTG
AAGTCGGCGACGGCCTTTTCCCGACTGGTCGTGGAGGAGTTCTTCGTACAAGCGGTGGAGCAGGAAAACAGG
TCACAGCAGGTGTCCGAAGCTTGA
Translation:
MKDHLIGSVPAHLVDAARPTLTAHEGLVADYNIAAWLHLPDACDLLVSLVVSYLDGGRQREVAVDHGRIDRQ
QRILLSGIARLPVRQKVENMQVRLKSATAFSRLVVEEFFVQAVEQENRSQQVSEA*
AnnotationID:4867GeneID:4862
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0952
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9724




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4862
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7240
                           PA0952_tr
                           translation of PA0952
                           127
                           99.99
                           99.99
                           0
                           634.0
     

     
     
189089
                           gb|AAG04341.1|AE004529_7
                           (AE004529) hypothetical protein PA0952 [Pseudomonas aeruginosa PAO1]
                           127
                           99.99
                           99.99
                           0
                           634.0
     

     






      

          
GC ORFID: 47864How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0952Glimmer Score: 

          
Start: 341996Stop: 341613

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0952 translation of PA0952Homolog Bit Score 248.0

          
Other Homologs:  t_PA0952 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGACCATCTGATCGGAAGCGTCCCCGCACACCTGGTGGATGCCGCACGCCCGACCCTGACAGCCCAC 
GAGGGCCTGGTCGCGGACTACAACATTGCCGCCTGGCTACATCTTCCGGATGCCTGCGACCTGCTGGTGTCA 
CTGGTGGTCAGCTATCTGGATGGCGGGCGCCAGCGCGAAGTGGCGGTGGATCACGGACGAATCGACCGCCAG 
CAACGCATCCTGCTTTCCGGCATTGCCCGCCTGCCCGTACGGCAGAAAGTGGAGAACATGCAGGTACGCCTG 
AAGTCGGCGACGGCCTTTTCCCGACTGGTCGTGGAGGAGTTCTTCGTACAAGCGGTGGAGCAGGAAAACAGG 
TCACAGCAGGTGTCCGAAGCTTGA