ViewGene
Locus Name:
GeneID:
Location:

GeneID:4860
TrivialName: PA14_56180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56180
PAO1 Ortholog Locus:PA4324
Sequence Length:360
Protein Length:119
Start: 5017451
Stop: 5017092
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07712.1|AE004848_11 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
ATGGGTCTTCAACGACATATCCAGCGCCATCAGTTGCCCAGCTACCTGAAGGTGTTCAATCGCATCACCGAC
AAGCCGATGGGCTACATCGGCAACGTCTCCGAGGACGGCCTGCTGCTGATCAGCCAACTGCCGATGCTGGTC
GGCGCGCGTTTCGAACTGCGCCTGAAGGTTCCGGGACTGGGCGGTCGCCCGCAATGCATCGATTTTTCCGCC
GACTGCCGGTGGACCTGCGAGGACGTCACGCCCGGTCATTTCGATTCCGGCTTCCACCTGCTGGCGCCGCCC
GCCGAATTCCTCGAACTGGTGGAGGCGCTGCGCCGCTACTTCAGCTTCCCCCGCCAGCCGCAGTCGGTCTGA
Translation:
MGLQRHIQRHQLPSYLKVFNRITDKPMGYIGNVSEDGLLLISQLPMLVGARFELRLKVPGLGGRPQCIDFSA
DCRWTCEDVTPGHFDSGFHLLAPPAEFLELVEALRRYFSFPRQPQSV*
AnnotationID:4865GeneID:4860
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4324
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9720




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26861




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4860
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7238
                           PA4324_tr
                           translation of PA4324
                           119
                           99.99
                           99.99
                           0
                           637.0
     

     
     
189075
                           gb|AAG07712.1|AE004848_11
                           (AE004848) hypothetical protein PA4324 [Pseudomonas aeruginosa PAO1]
                           119
                           99.99
                           99.99
                           0
                           637.0
     

     
     
189077
                           gb|AAO57786.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           52.45
                           68.03
                           6
                           302.0
     

     
     
189076
                           gb|AAN66987.1|AE016327_2
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           159
                           39.62
                           53.45
                           42
                           321.0
     

     






      

          
GC ORFID: 47862How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4324Glimmer Score: 

          
Start: 4281127Stop: 4280768

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4324 translation of PA4324Homolog Bit Score 249.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2098 (ORF: BLASTX 122.0), t_PA4324 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTCTTCAACGACATATCCAGCGCCATCAGTTGCCCAGCTACCTGAAGGTGTTCAATCGCATCACCGAC 
AAGCCGATGGGCTACATCGGCAACGTCTCCGAGGACGGCCTGCTGCTGATCAGCCAACTGCCGATGCTGGTC 
GGCGCGCGTTTCGAACTGCGCCTGAAGGTTCCGGGACTGGGCGGTCGCCCGCAATGCATCGATTTTTCCGCC 
GACTGCCGGTGGACCTGCGAGGACGTCACGCCCGGTCATTTCGATTCCGGCTTCCACCTGCTGGCGCCGCCC 
GCCGAATTCCTCGAACTGGTGGAGGCGCTGCGCCGCTACTTCAGCTTCCCCCGCCAGCCGCAGTCGGTCTGA