ViewGene
Locus Name:
GeneID:
Location:

GeneID:4805
TrivialName: PA14_60900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60900
PAO1 Ortholog Locus:PA4603
Sequence Length:381
Protein Length:126
Start: 5434918
Stop: 5434538
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07991.1|AE004874_4 (AE004874) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/126 (98%), Positives = 126/126 (100%)
Sequence:
GTGGAAATGGACAGGGACGCATTGATCGGCGCCTGGCGGGAGTGCATCCGTGGCGCGGACAAATCCTGGGTG
CTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGAGCCGGACCTCGCGGCCCAGGCGCGGGCATTG
CTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGGCGACTTCGGCGTGATCACCCTGGACAACGGC
CGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTACCTTCGTCCCTCGCGAGGAACTGGAGGAGGAC
GCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCGGGGCGAGGATGCCGAGGCCTTGGCGGTGATC
CATGTCGAGGACCGGCGATAA
Translation:
MEMDRDALIGAWRECIRGADKSWVLFAQGTCVILTQPEPDLAAQARALLAEWGAVQVGTPAGDFGVITLDNG
RGWVVTGHHPDILTFVPREELEEDAGELLVGMHGRSRRGEDAEALAVIHVEDRR*
AnnotationID:4810GeneID:4805
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4603
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15184




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26751




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4805
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7182
                           PA4603_tr
                           translation of PA4603
                           126
                           98.41
                           99.99
                           0
                           657.0
     

     
     
188065
                           gb|AAG07991.1|AE004874_4
                           (AE004874) hypothetical protein PA4603 [Pseudomonas aeruginosa PAO1]
                           126
                           97.61
                           99.99
                           0
                           654.0
     

     
     
188066
                           gb|AAF41193.1|
                           (AE002431) hypothetical protein [Neisseria meningitidis MC58]
                           149
                           44.96
                           59.73
                           26
                           351.0
     

     






      

          
GC ORFID: 47807How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4603Glimmer Score: 

          
Start: 4698598Stop: 4698218

          
Length: 381


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4603 translation of PA4603Homolog Bit Score 257.0

          
Other Homologs:  t_PA4603 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAAATGGACAGGGACGCATTGATCGGCGCCTGGCGGGAGTGCATCCGTGGCGCGGACAAATCCTGGGTG 
CTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGAGCCGGACCTCGCGGCCCAGGCGCGGGCATTG 
CTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGGCGACTTCGGCGTGATCACCCTGGACAACGGC 
CGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTACCTTCGTCCCTCGCGAGGAACTGGAGGAGGAC 
GCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCGGGGCGAGGATGCCGAGGCCTTGGCGGTGATC 
CATGTCGAGGACCGGCGATAA