ViewGene

Locus Name:
GeneID:
Location:

GeneID:4805
TrivialName: PA14_60900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60900
PAO1 Ortholog Locus:PA4603
Sequence Length:381
Protein Length:126
Start: 5434918
Stop: 5434538
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07991.1|AE004874_4 (AE004874) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/126 (98%), Positives = 126/126 (100%)
Sequence:
GTGGAAATGGACAGGGACGCATTGATCGGCGCCTGGCGGGAGTGCATCCGTGGCGCGGACAAATCCTGGGTG
CTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGAGCCGGACCTCGCGGCCCAGGCGCGGGCATTG
CTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGGCGACTTCGGCGTGATCACCCTGGACAACGGC
CGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTACCTTCGTCCCTCGCGAGGAACTGGAGGAGGAC
GCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCGGGGCGAGGATGCCGAGGCCTTGGCGGTGATC
CATGTCGAGGACCGGCGATAA
Translation:
MEMDRDALIGAWRECIRGADKSWVLFAQGTCVILTQPEPDLAAQARALLAEWGAVQVGTPAGDFGVITLDNG
RGWVVTGHHPDILTFVPREELEEDAGELLVGMHGRSRRGEDAEALAVIHVEDRR*
AnnotationID:4810GeneID:4805
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4603
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15184
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26751
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4805

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7182 PA4603_tr translation of PA4603 126 98.41 99.99 0 657.0
188065 gb|AAG07991.1|AE004874_4 (AE004874) hypothetical protein PA4603 [Pseudomonas aeruginosa PAO1] 126 97.61 99.99 0 654.0
188066 gb|AAF41193.1| (AE002431) hypothetical protein [Neisseria meningitidis MC58] 149 44.96 59.73 26 351.0
GC ORFID: 47807How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4603Glimmer Score:
Start: 4698598Stop: 4698218
Length: 381
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4603 translation of PA4603Homolog Bit Score 257.0
Other Homologs: t_PA4603 (ORF: GLIMMER)
GC ORF Sequence
GTGGAAATGGACAGGGACGCATTGATCGGCGCCTGGCGGGAGTGCATCCGTGGCGCGGACAAATCCTGGGTG
CTGTTCGCCCAGGGCACTTGCGTGATCCTCACGCAGCCGGAGCCGGACCTCGCGGCCCAGGCGCGGGCATTG
CTGGCCGAGTGGGGAGCGGTACAGGTCGGCACGCCGGCGGGCGACTTCGGCGTGATCACCCTGGACAACGGC
CGCGGCTGGGTGGTGACCGGGCATCACCCGGACATCCTTACCTTCGTCCCTCGCGAGGAACTGGAGGAGGAC
GCCGGCGAGCTGCTCGTCGGCATGCACGGCCGCTCCCGGCGGGGCGAGGATGCCGAGGCCTTGGCGGTGATC
CATGTCGAGGACCGGCGATAA