ViewGene
Locus Name:
GeneID:
Location:

GeneID:48
TrivialName: PA14_00910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00910
PAO1 Ortholog Locus:PA0077
Sequence Length:3309
Protein Length:1102
Start: 92474
Stop: 89166
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03467.1|AE004446_15 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1097/1102 (99%), Positives = 1099/1102 (99%), Gaps = 1/1102 (0%)
Sequence:
ATGCAGAGTCTCGCCGAGGTCAGCGCGCCGGACGCCGCCAGCGTCGCCACCGCCGAAGAGCTGGCGACCCTC
AAGCAACGCATGGACGAGGCCCTGGCCCTGCTCAAGCGGGCCAAGCTGGGCGGCAGCGAGCGGCGCAACCTG
TACGAGTTGCCCTGGTACGTGATCATCGGCCCGCCCGGTTCGGGCAAGACCACCGCGCTGATGAACTCCGGC
CTGGACTTCCCGCTCGCCGCACAGATGGGCGCCGGGGCGATCCGCGGGGTCGGCGGCACGCGCAACTGCGAC
TGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGCCGCTATACCACCCAGGACAGCCACGCCCAG
GTGGACAAGGCCGCCTGGCTGGGCTTCCTCGACCTGCTCAAGACCCAGCGCAAGCGCCGCCCCATCGATGGC
GCGTTCATCGCCATCAGCCTTTCCGACCTGCTGCTGGGCAGCGACGCCGAGCGCGCCGCCCATGCCCAGGCG
ATCCGCGCGCGCATCCAGGAGCTGTACCAGCAGCTCGGGGTGCGCTTCCCGATCTACGTGATGCTGACCAAG
TTCGACCTGGTGCCGGGCTTCATGGAGTTCTTCGACAGCCTGAACCGCGAGGAACGCGCGCAGGTCTGGGGG
ATGACCTTCGCCCTCGACGACGGCAAGAGCGCGGAAGGCCCGCTGGCGGTGTTCGACAGCGAATTCGCCCTG
CTCGAACAGCGTCTCACCGCGCGCCTGGTGGAACGCCTGCAGCAGGAGCGCGACCCGGCGCGGCGCGACCTG
GTCTACGGCTTCCCGCAGCAATTCGCCGCCCTGCGCGAATGCCTCGGCGAGTTCCTCAACGGCGTGTTCAAG
CCCAACCCCTACGAGGAACGCCCGCTGTTGCGCGGCCTGTACTTCACCAGCGGAACCCAGGAAGGCAGTCCG
ATCGACCGCCTGATCGGCAGCATGGCGCAGTCGATGAACCTCGACCGCCAGCACCTGGCGCGGCAGACCGGA
ACCGGGCGCAGCTACTTCATCGAGCGGCTGTTCCGCGAAGTGGCGTTCGGCGAACGCGGCCTGGTCGGCACC
AACCCGAAGGTCGAGCGCCGCCGCAAATGGCTGACCATCGGCGCGCTGAGCGCCACCGCGCTGGTGGTGCTG
GCGGTGACGGCGGTATGGATCGCCAGCTACCGCGCCAACCAGAGCTACATCGCCGCGGTCGACCAGCGCGTC
GACCCGCTGGCGCGCGGCATCGAGTCGCTGAGCCCGGCCCAGCGCGACGTCCTGGCCGTACTGCCACAGCTC
AACGCGGTGCAGAATCTCGCCGGCGACGCGCCAAGCTGGGCCGAAGGCTACGGGCTGTACCAGGGCGACATG
CTCGGCGAGGAGTCCGCCAGCGTCTACCGCAAGCTGCTGATCGCGGTGTTCGCCCCGCGCCTGGTGACCCGC
ATCGAGGAACAGTTGCGCTCCGGCGGCAGCAGCGATTTCCTCTACGAGGGCCTGAAGGCCTACCTGATGCTC
GGCAGCCCGGACCATTACGACGCCGACTTCATCAAGGCCTGGATCAGCCTCGACTGGGAACGCAACCTGCCG
CGCGACCTCTCGCCGGAACAGCGCCAGGCGCTGCACGCGCACCTCGACGCGTTGCTCGAACGACGGCCGCCG
TCGGCGCGCCTGGACCAGGACCTGGTCGAGGACCTGCGCCGCCAGTTGCAGCAACTACCGGTGGCGCAGCGG
GTCTACGACCGGGTCAAGCGGCAGAGGCTGCCCAAGGACGTGCCCGACTTCCGCATCAGCGACGCCGCCGGC
CGCGACGCACCGCTGGTGTTCGCGCGCAAGAGCGGCAAGCCGCTCACCGACCCGCTCAGCGGCTTCTTCACC
TACCGCGGCTATCGCGAGGTGTTCCTCACCGCCAGCCTCAGCCAGGCCGGCACCATCGCCGAGGAACAGTGG
GTGCTCGGGCGCGACCTGAACGATGCCGGCGATGCCGCCAACCTGGCCCTCGACGTGCGTCGCCTGTACTTC
CAGGACTACCTGCGGCAATGGGACGACCTGCTCGCCGACCTCACCGTGGTGCCGATCACCAACGTCACCCAG
GCCGCCGACGTGCTGCGCATTCTCTCCGGGCCGACCTCGCCGTTCCGCAAGCTGCTCGAGGCGGTGGCCCGC
GAGACCGACCTGCAGAAGGGCGACCGGCTGGTCGCCGCGCAAGTGAAGAAGGCCGCCGACGGCACCGTGGAC
AAGCTCAAGCAGCGCCTCGGCTCGCTGGTCGGCCAGGAGGAGGAGGAAGGCGCCCGCGAACAGCCGCAGCAG
GCCGACAGCGACCCGATCAGCGCCCACTTCGCCGAACTCAACAGCCTGGTCAGCAAGGGCGAGGGCGGCAAC
GAGCCGGCGCCGATCGACAGCCTGCTGGAGGACATGAACGCGCTCTACGTACAGGTCAGCGCCATGGCCGGA
GCCAGCGGCGACTCGCTGCTCGGCGACGCCAAGAACCAGGTGGCCGCCGCCGCCTCGCGCGTGGCCCTCAGC
GCCGAGCGCCAGCCGCCGGTGGTCCAGGGCCTGGTGAAGAACGTGGTCAACTCCACCACCAGCAGCATGATG
GGCAGCGTGCGCAACCAGCTCAACGCGGCCTGGATCAGCGACGTGGTCAGCGTCTACCGGCAGTCCCTGGCC
GGGCGCTACCCGATCGCCGCCGGCAGCTCGCGCGACGCCACCCTGGAAGACTTCGGCCACTTCTTCGGTGCC
GGTGGGGTGATGGACAGCTACTTCCGCCAGTACCTGCAACCCTACGTCGACACCTCCGCCAGCACCTGGCGC
TGGCAGCCCGGCGCGGCGCAGAAGCTCGGCATCAACCCCGGCGTGCTGCACACCTTCCAGCGCGCGGCGGCG
ATCCGCGACGCCTTCTTCCGCTCCGGCGGCATGCAGCCGGCGGTGCGCTTCGAACTCAAGCCGGTGACCATG
GACGCGGCGATCAGCCAGTTCATCCTCGACCTCGACGGCCAGCAGCTGACCTACGACCACGGCCCCGCCCGC
CCGGTGGCGATGCAGTGGCCGAGCGCCAACGGCCTCGGCGTGGTCCGCCTGACGGTGACGCCGCCGCCCAGC
AGCGGCCGTTCCGGCCTGACCCTGGAGGGCCCCTGGGCCTGGTTCCGCCTGCTCGACCAGTCGGACCTGGAA
CGCGGCAACTCGCCGGACCGCTTCACCCTGCGGCTGCGCATCGACGGCTCCAGCATCGCCTGCGAGCTGCGC
GCCAGCAGCGCCTTCAACCCCTTCAAGAGCCGGGTCGTGTCCGGCTTCAGCCTCCCGGAGCGCCTTTGA
Translation:
MQSLAEVSAPDAASVATAEELATLKQRMDEALALLKRAKLGGSERRNLYELPWYVIIGPPGSGKTTALMNSG
LDFPLAAQMGAGAIRGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDG
AFIAISLSDLLLGSDAERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWG
MTFALDDGKSAEGPLAVFDSEFALLEQRLTARLVERLQQERDPARRDLVYGFPQQFAALRECLGEFLNGVFK
PNPYEERPLLRGLYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIERLFREVAFGERGLVGT
NPKVERRRKWLTIGALSATALVVLAVTAVWIASYRANQSYIAAVDQRVDPLARGIESLSPAQRDVLAVLPQL
NAVQNLAGDAPSWAEGYGLYQGDMLGEESASVYRKLLIAVFAPRLVTRIEEQLRSGGSSDFLYEGLKAYLML
GSPDHYDADFIKAWISLDWERNLPRDLSPEQRQALHAHLDALLERRPPSARLDQDLVEDLRRQLQQLPVAQR
VYDRVKRQRLPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPLSGFFTYRGYREVFLTASLSQAGTIAEEQW
VLGRDLNDAGDAANLALDVRRLYFQDYLRQWDDLLADLTVVPITNVTQAADVLRILSGPTSPFRKLLEAVAR
ETDLQKGDRLVAAQVKKAADGTVDKLKQRLGSLVGQEEEEGAREQPQQADSDPISAHFAELNSLVSKGEGGN
EPAPIDSLLEDMNALYVQVSAMAGASGDSLLGDAKNQVAAAASRVALSAERQPPVVQGLVKNVVNSTTSSMM
GSVRNQLNAAWISDVVSVYRQSLAGRYPIAAGSSRDATLEDFGHFFGAGGVMDSYFRQYLQPYVDTSASTWR
WQPGAAQKLGINPGVLHTFQRAAAIRDAFFRSGGMQPAVRFELKPVTMDAAISQFILDLDGQQLTYDHGPAR
PVAMQWPSANGLGVVRLTVTPPPSSGRSGLTLEGPWAWFRLLDQSDLERGNSPDRFTLRLRIDGSSIACELR
ASSAFNPFKSRVVSGFSLPERL*
AnnotationID:58GeneID:48
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06761
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam06761, ImcF-related, ImcF-related.
CD-Length = 309 residues,  99.7% aligned
Score =  282 bits (722), Expect = 2e-76
Identities = 127/308 (41%), Positives = 169/308 (54%), Gaps = 7/308 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:99




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33420




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:48_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:48
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
90
                           PA0077_tr
                           translation of PA0077
                           1102
                           99.54
                           99.72
                           1
                           5590.0
     

     
     
11689
                           gb|AAG03467.1|AE004446_15
                           (AE004446) hypothetical protein PA0077 [Pseudomonas aeruginosa PAO1]
                           1102
                           99.54
                           99.72
                           1
                           5590.0
     

     






      

          
GC ORFID: 43050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0077Glimmer Score: 

          
Start: 5893812Stop: 5890504

          
Length: 3309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0077 translation of PA0077Homolog Bit Score 2157.0

          
Other Homologs:  t_PA0077 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAGTCTCGCCGAGGTCAGCGCGCCGGACGCCGCCAGCGTCGCCACCGCCGAAGAGCTGGCGACCCTC 
AAGCAACGCATGGACGAGGCCCTGGCCCTGCTCAAGCGGGCCAAGCTGGGCGGCAGCGAGCGGCGCAACCTG 
TACGAGTTGCCCTGGTACGTGATCATCGGCCCGCCCGGTTCGGGCAAGACCACCGCGCTGATGAACTCCGGC 
CTGGACTTCCCGCTCGCCGCACAGATGGGCGCCGGGGCGATCCGCGGGGTCGGCGGCACGCGCAACTGCGAC 
TGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGCCGCTATACCACCCAGGACAGCCACGCCCAG 
GTGGACAAGGCCGCCTGGCTGGGCTTCCTCGACCTGCTCAAGACCCAGCGCAAGCGCCGCCCCATCGATGGC 
GCGTTCATCGCCATCAGCCTTTCCGACCTGCTGCTGGGCAGCGACGCCGAGCGCGCCGCCCATGCCCAGGCG 
ATCCGCGCGCGCATCCAGGAGCTGTACCAGCAGCTCGGGGTGCGCTTCCCGATCTACGTGATGCTGACCAAG 
TTCGACCTGGTGCCGGGCTTCATGGAGTTCTTCGACAGCCTGAACCGCGAGGAACGCGCGCAGGTCTGGGGG 
ATGACCTTCGCCCTCGACGACGGCAAGAGCGCGGAAGGCCCGCTGGCGGTGTTCGACAGCGAATTCGCCCTG 
CTCGAACAGCGTCTCACCGCGCGCCTGGTGGAACGCCTGCAGCAGGAGCGCGACCCGGCGCGGCGCGACCTG 
GTCTACGGCTTCCCGCAGCAATTCGCCGCCCTGCGCGAATGCCTCGGCGAGTTCCTCAACGGCGTGTTCAAG 
CCCAACCCCTACGAGGAACGCCCGCTGTTGCGCGGCCTGTACTTCACCAGCGGAACCCAGGAAGGCAGTCCG 
ATCGACCGCCTGATCGGCAGCATGGCGCAGTCGATGAACCTCGACCGCCAGCACCTGGCGCGGCAGACCGGA 
ACCGGGCGCAGCTACTTCATCGAGCGGCTGTTCCGCGAAGTGGCGTTCGGCGAACGCGGCCTGGTCGGCACC 
AACCCGAAGGTCGAGCGCCGCCGCAAATGGCTGACCATCGGCGCGCTGAGCGCCACCGCGCTGGTGGTGCTG 
GCGGTGACGGCGGTATGGATCGCCAGCTACCGCGCCAACCAGAGCTACATCGCCGCGGTCGACCAGCGCGTC 
GACCCGCTGGCGCGCGGCATCGAGTCGCTGAGCCCGGCCCAGCGCGACGTCCTGGCCGTACTGCCACAGCTC 
AACGCGGTGCAGAATCTCGCCGGCGACGCGCCAAGCTGGGCCGAAGGCTACGGGCTGTACCAGGGCGACATG 
CTCGGCGAGGAGTCCGCCAGCGTCTACCGCAAGCTGCTGATCGCGGTGTTCGCCCCGCGCCTGGTGACCCGC 
ATCGAGGAACAGTTGCGCTCCGGCGGCAGCAGCGATTTCCTCTACGAGGGCCTGAAGGCCTACCTGATGCTC 
GGCAGCCCGGACCATTACGACGCCGACTTCATCAAGGCCTGGATCAGCCTCGACTGGGAACGCAACCTGCCG 
CGCGACCTCTCGCCGGAACAGCGCCAGGCGCTGCACGCGCACCTCGACGCGTTGCTCGAACGACGGCCGCCG 
TCGGCGCGCCTGGACCAGGACCTGGTCGAGGACCTGCGCCGCCAGTTGCAGCAACTACCGGTGGCGCAGCGG 
GTCTACGACCGGGTCAAGCGGCAGAGGCTGCCCAAGGACGTGCCCGACTTCCGCATCAGCGACGCCGCCGGC 
CGCGACGCACCGCTGGTGTTCGCGCGCAAGAGCGGCAAGCCGCTCACCGACCCGCTCAGCGGCTTCTTCACC 
TACCGCGGCTATCGCGAGGTGTTCCTCACCGCCAGCCTCAGCCAGGCCGGCACCATCGCCGAGGAACAGTGG 
GTGCTCGGGCGCGACCTGAACGATGCCGGCGATGCCGCCAACCTGGCCCTCGACGTGCGTCGCCTGTACTTC 
CAGGACTACCTGCGGCAATGGGACGACCTGCTCGCCGACCTCACCGTGGTGCCGATCACCAACGTCACCCAG 
GCCGCCGACGTGCTGCGCATTCTCTCCGGGCCGACCTCGCCGTTCCGCAAGCTGCTCGAGGCGGTGGCCCGC 
GAGACCGACCTGCAGAAGGGCGACCGGCTGGTCGCCGCGCAAGTGAAGAAGGCCGCCGACGGCACCGTGGAC 
AAGCTCAAGCAGCGCCTCGGCTCGCTGGTCGGCCAGGAGGAGGAGGAAGGCGCCCGCGAACAGCCGCAGCAG 
GCCGACAGCGACCCGATCAGCGCCCACTTCGCCGAACTCAACAGCCTGGTCAGCAAGGGCGAGGGCGGCAAC 
GAGCCGGCGCCGATCGACAGCCTGCTGGAGGACATGAACGCGCTCTACGTACAGGTCAGCGCCATGGCCGGA 
GCCAGCGGCGACTCGCTGCTCGGCGACGCCAAGAACCAGGTGGCCGCCGCCGCCTCGCGCGTGGCCCTCAGC 
GCCGAGCGCCAGCCGCCGGTGGTCCAGGGCCTGGTGAAGAACGTGGTCAACTCCACCACCAGCAGCATGATG 
GGCAGCGTGCGCAACCAGCTCAACGCGGCCTGGATCAGCGACGTGGTCAGCGTCTACCGGCAGTCCCTGGCC 
GGGCGCTACCCGATCGCCGCCGGCAGCTCGCGCGACGCCACCCTGGAAGACTTCGGCCACTTCTTCGGTGCC 
GGTGGGGTGATGGACAGCTACTTCCGCCAGTACCTGCAACCCTACGTCGACACCTCCGCCAGCACCTGGCGC 
TGGCAGCCCGGCGCGGCGCAGAAGCTCGGCATCAACCCCGGCGTGCTGCACACCTTCCAGCGCGCGGCGGCG 
ATCCGCGACGCCTTCTTCCGCTCCGGCGGCATGCAGCCGGCGGTGCGCTTCGAACTCAAGCCGGTGACCATG 
GACGCGGCGATCAGCCAGTTCATCCTCGACCTCGACGGCCAGCAGCTGACCTACGACCACGGCCCCGCCCGC 
CCGGTGGCGATGCAGTGGCCGAGCGCCAACGGCCTCGGCGTGGTCCGCCTGACGGTGACGCCGCCGCCCAGC 
AGCGGCCGTTCCGGCCTGACCCTGGAGGGCCCCTGGGCCTGGTTCCGCCTGCTCGACCAGTCGGACCTGGAA 
CGCGGCAACTCGCCGGACCGCTTCACCCTGCGGCTGCGCATCGACGGCTCCAGCATCGCCTGCGAGCTGCGC 
GCCAGCAGCGCCTTCAACCCCTTCAAGAGCCGGGTCGTGTCCGGCTTCAGCCTCCCGGAGCGCCTTTGA