ViewGene

Locus Name:
GeneID:
Location:

GeneID:48
TrivialName: PA14_00910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00910
PAO1 Ortholog Locus:PA0077
Sequence Length:3309
Protein Length:1102
Start: 92474
Stop: 89166
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03467.1|AE004446_15 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1097/1102 (99%), Positives = 1099/1102 (99%), Gaps = 1/1102 (0%)
Sequence:
ATGCAGAGTCTCGCCGAGGTCAGCGCGCCGGACGCCGCCAGCGTCGCCACCGCCGAAGAGCTGGCGACCCTC
AAGCAACGCATGGACGAGGCCCTGGCCCTGCTCAAGCGGGCCAAGCTGGGCGGCAGCGAGCGGCGCAACCTG
TACGAGTTGCCCTGGTACGTGATCATCGGCCCGCCCGGTTCGGGCAAGACCACCGCGCTGATGAACTCCGGC
CTGGACTTCCCGCTCGCCGCACAGATGGGCGCCGGGGCGATCCGCGGGGTCGGCGGCACGCGCAACTGCGAC
TGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGCCGCTATACCACCCAGGACAGCCACGCCCAG
GTGGACAAGGCCGCCTGGCTGGGCTTCCTCGACCTGCTCAAGACCCAGCGCAAGCGCCGCCCCATCGATGGC
GCGTTCATCGCCATCAGCCTTTCCGACCTGCTGCTGGGCAGCGACGCCGAGCGCGCCGCCCATGCCCAGGCG
ATCCGCGCGCGCATCCAGGAGCTGTACCAGCAGCTCGGGGTGCGCTTCCCGATCTACGTGATGCTGACCAAG
TTCGACCTGGTGCCGGGCTTCATGGAGTTCTTCGACAGCCTGAACCGCGAGGAACGCGCGCAGGTCTGGGGG
ATGACCTTCGCCCTCGACGACGGCAAGAGCGCGGAAGGCCCGCTGGCGGTGTTCGACAGCGAATTCGCCCTG
CTCGAACAGCGTCTCACCGCGCGCCTGGTGGAACGCCTGCAGCAGGAGCGCGACCCGGCGCGGCGCGACCTG
GTCTACGGCTTCCCGCAGCAATTCGCCGCCCTGCGCGAATGCCTCGGCGAGTTCCTCAACGGCGTGTTCAAG
CCCAACCCCTACGAGGAACGCCCGCTGTTGCGCGGCCTGTACTTCACCAGCGGAACCCAGGAAGGCAGTCCG
ATCGACCGCCTGATCGGCAGCATGGCGCAGTCGATGAACCTCGACCGCCAGCACCTGGCGCGGCAGACCGGA
ACCGGGCGCAGCTACTTCATCGAGCGGCTGTTCCGCGAAGTGGCGTTCGGCGAACGCGGCCTGGTCGGCACC
AACCCGAAGGTCGAGCGCCGCCGCAAATGGCTGACCATCGGCGCGCTGAGCGCCACCGCGCTGGTGGTGCTG
GCGGTGACGGCGGTATGGATCGCCAGCTACCGCGCCAACCAGAGCTACATCGCCGCGGTCGACCAGCGCGTC
GACCCGCTGGCGCGCGGCATCGAGTCGCTGAGCCCGGCCCAGCGCGACGTCCTGGCCGTACTGCCACAGCTC
AACGCGGTGCAGAATCTCGCCGGCGACGCGCCAAGCTGGGCCGAAGGCTACGGGCTGTACCAGGGCGACATG
CTCGGCGAGGAGTCCGCCAGCGTCTACCGCAAGCTGCTGATCGCGGTGTTCGCCCCGCGCCTGGTGACCCGC
ATCGAGGAACAGTTGCGCTCCGGCGGCAGCAGCGATTTCCTCTACGAGGGCCTGAAGGCCTACCTGATGCTC
GGCAGCCCGGACCATTACGACGCCGACTTCATCAAGGCCTGGATCAGCCTCGACTGGGAACGCAACCTGCCG
CGCGACCTCTCGCCGGAACAGCGCCAGGCGCTGCACGCGCACCTCGACGCGTTGCTCGAACGACGGCCGCCG
TCGGCGCGCCTGGACCAGGACCTGGTCGAGGACCTGCGCCGCCAGTTGCAGCAACTACCGGTGGCGCAGCGG
GTCTACGACCGGGTCAAGCGGCAGAGGCTGCCCAAGGACGTGCCCGACTTCCGCATCAGCGACGCCGCCGGC
CGCGACGCACCGCTGGTGTTCGCGCGCAAGAGCGGCAAGCCGCTCACCGACCCGCTCAGCGGCTTCTTCACC
TACCGCGGCTATCGCGAGGTGTTCCTCACCGCCAGCCTCAGCCAGGCCGGCACCATCGCCGAGGAACAGTGG
GTGCTCGGGCGCGACCTGAACGATGCCGGCGATGCCGCCAACCTGGCCCTCGACGTGCGTCGCCTGTACTTC
CAGGACTACCTGCGGCAATGGGACGACCTGCTCGCCGACCTCACCGTGGTGCCGATCACCAACGTCACCCAG
GCCGCCGACGTGCTGCGCATTCTCTCCGGGCCGACCTCGCCGTTCCGCAAGCTGCTCGAGGCGGTGGCCCGC
GAGACCGACCTGCAGAAGGGCGACCGGCTGGTCGCCGCGCAAGTGAAGAAGGCCGCCGACGGCACCGTGGAC
AAGCTCAAGCAGCGCCTCGGCTCGCTGGTCGGCCAGGAGGAGGAGGAAGGCGCCCGCGAACAGCCGCAGCAG
GCCGACAGCGACCCGATCAGCGCCCACTTCGCCGAACTCAACAGCCTGGTCAGCAAGGGCGAGGGCGGCAAC
GAGCCGGCGCCGATCGACAGCCTGCTGGAGGACATGAACGCGCTCTACGTACAGGTCAGCGCCATGGCCGGA
GCCAGCGGCGACTCGCTGCTCGGCGACGCCAAGAACCAGGTGGCCGCCGCCGCCTCGCGCGTGGCCCTCAGC
GCCGAGCGCCAGCCGCCGGTGGTCCAGGGCCTGGTGAAGAACGTGGTCAACTCCACCACCAGCAGCATGATG
GGCAGCGTGCGCAACCAGCTCAACGCGGCCTGGATCAGCGACGTGGTCAGCGTCTACCGGCAGTCCCTGGCC
GGGCGCTACCCGATCGCCGCCGGCAGCTCGCGCGACGCCACCCTGGAAGACTTCGGCCACTTCTTCGGTGCC
GGTGGGGTGATGGACAGCTACTTCCGCCAGTACCTGCAACCCTACGTCGACACCTCCGCCAGCACCTGGCGC
TGGCAGCCCGGCGCGGCGCAGAAGCTCGGCATCAACCCCGGCGTGCTGCACACCTTCCAGCGCGCGGCGGCG
ATCCGCGACGCCTTCTTCCGCTCCGGCGGCATGCAGCCGGCGGTGCGCTTCGAACTCAAGCCGGTGACCATG
GACGCGGCGATCAGCCAGTTCATCCTCGACCTCGACGGCCAGCAGCTGACCTACGACCACGGCCCCGCCCGC
CCGGTGGCGATGCAGTGGCCGAGCGCCAACGGCCTCGGCGTGGTCCGCCTGACGGTGACGCCGCCGCCCAGC
AGCGGCCGTTCCGGCCTGACCCTGGAGGGCCCCTGGGCCTGGTTCCGCCTGCTCGACCAGTCGGACCTGGAA
CGCGGCAACTCGCCGGACCGCTTCACCCTGCGGCTGCGCATCGACGGCTCCAGCATCGCCTGCGAGCTGCGC
GCCAGCAGCGCCTTCAACCCCTTCAAGAGCCGGGTCGTGTCCGGCTTCAGCCTCCCGGAGCGCCTTTGA
Translation:
MQSLAEVSAPDAASVATAEELATLKQRMDEALALLKRAKLGGSERRNLYELPWYVIIGPPGSGKTTALMNSG
LDFPLAAQMGAGAIRGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDG
AFIAISLSDLLLGSDAERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWG
MTFALDDGKSAEGPLAVFDSEFALLEQRLTARLVERLQQERDPARRDLVYGFPQQFAALRECLGEFLNGVFK
PNPYEERPLLRGLYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIERLFREVAFGERGLVGT
NPKVERRRKWLTIGALSATALVVLAVTAVWIASYRANQSYIAAVDQRVDPLARGIESLSPAQRDVLAVLPQL
NAVQNLAGDAPSWAEGYGLYQGDMLGEESASVYRKLLIAVFAPRLVTRIEEQLRSGGSSDFLYEGLKAYLML
GSPDHYDADFIKAWISLDWERNLPRDLSPEQRQALHAHLDALLERRPPSARLDQDLVEDLRRQLQQLPVAQR
VYDRVKRQRLPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPLSGFFTYRGYREVFLTASLSQAGTIAEEQW
VLGRDLNDAGDAANLALDVRRLYFQDYLRQWDDLLADLTVVPITNVTQAADVLRILSGPTSPFRKLLEAVAR
ETDLQKGDRLVAAQVKKAADGTVDKLKQRLGSLVGQEEEEGAREQPQQADSDPISAHFAELNSLVSKGEGGN
EPAPIDSLLEDMNALYVQVSAMAGASGDSLLGDAKNQVAAAASRVALSAERQPPVVQGLVKNVVNSTTSSMM
GSVRNQLNAAWISDVVSVYRQSLAGRYPIAAGSSRDATLEDFGHFFGAGGVMDSYFRQYLQPYVDTSASTWR
WQPGAAQKLGINPGVLHTFQRAAAIRDAFFRSGGMQPAVRFELKPVTMDAAISQFILDLDGQQLTYDHGPAR
PVAMQWPSANGLGVVRLTVTPPPSSGRSGLTLEGPWAWFRLLDQSDLERGNSPDRFTLRLRIDGSSIACELR
ASSAFNPFKSRVVSGFSLPERL*
AnnotationID:58GeneID:48
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06761
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam06761, ImcF-related, ImcF-related.
CD-Length = 309 residues,  99.7% aligned
Score =  282 bits (722), Expect = 2e-76
Identities = 127/308 (41%), Positives = 169/308 (54%), Gaps = 7/308 (2%)
Genomic Context:
Comment:
ReferenceID:99
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17241
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33420
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:48_cdd.html
URL:
Homologs By Global Alignment
Gene ID:48

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
90 PA0077_tr translation of PA0077 1102 99.54 99.72 1 5590.0
11689 gb|AAG03467.1|AE004446_15 (AE004446) hypothetical protein PA0077 [Pseudomonas aeruginosa PAO1] 1102 99.54 99.72 1 5590.0
GC ORFID: 43050How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0077Glimmer Score:
Start: 5893812Stop: 5890504
Length: 3309
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0077 translation of PA0077Homolog Bit Score 2157.0
Other Homologs: t_PA0077 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGAGTCTCGCCGAGGTCAGCGCGCCGGACGCCGCCAGCGTCGCCACCGCCGAAGAGCTGGCGACCCTC
AAGCAACGCATGGACGAGGCCCTGGCCCTGCTCAAGCGGGCCAAGCTGGGCGGCAGCGAGCGGCGCAACCTG
TACGAGTTGCCCTGGTACGTGATCATCGGCCCGCCCGGTTCGGGCAAGACCACCGCGCTGATGAACTCCGGC
CTGGACTTCCCGCTCGCCGCACAGATGGGCGCCGGGGCGATCCGCGGGGTCGGCGGCACGCGCAACTGCGAC
TGGTGGTTCACCGACGAAGCGGTGCTGCTGGACACCGCCGGCCGCTATACCACCCAGGACAGCCACGCCCAG
GTGGACAAGGCCGCCTGGCTGGGCTTCCTCGACCTGCTCAAGACCCAGCGCAAGCGCCGCCCCATCGATGGC
GCGTTCATCGCCATCAGCCTTTCCGACCTGCTGCTGGGCAGCGACGCCGAGCGCGCCGCCCATGCCCAGGCG
ATCCGCGCGCGCATCCAGGAGCTGTACCAGCAGCTCGGGGTGCGCTTCCCGATCTACGTGATGCTGACCAAG
TTCGACCTGGTGCCGGGCTTCATGGAGTTCTTCGACAGCCTGAACCGCGAGGAACGCGCGCAGGTCTGGGGG
ATGACCTTCGCCCTCGACGACGGCAAGAGCGCGGAAGGCCCGCTGGCGGTGTTCGACAGCGAATTCGCCCTG
CTCGAACAGCGTCTCACCGCGCGCCTGGTGGAACGCCTGCAGCAGGAGCGCGACCCGGCGCGGCGCGACCTG
GTCTACGGCTTCCCGCAGCAATTCGCCGCCCTGCGCGAATGCCTCGGCGAGTTCCTCAACGGCGTGTTCAAG
CCCAACCCCTACGAGGAACGCCCGCTGTTGCGCGGCCTGTACTTCACCAGCGGAACCCAGGAAGGCAGTCCG
ATCGACCGCCTGATCGGCAGCATGGCGCAGTCGATGAACCTCGACCGCCAGCACCTGGCGCGGCAGACCGGA
ACCGGGCGCAGCTACTTCATCGAGCGGCTGTTCCGCGAAGTGGCGTTCGGCGAACGCGGCCTGGTCGGCACC
AACCCGAAGGTCGAGCGCCGCCGCAAATGGCTGACCATCGGCGCGCTGAGCGCCACCGCGCTGGTGGTGCTG
GCGGTGACGGCGGTATGGATCGCCAGCTACCGCGCCAACCAGAGCTACATCGCCGCGGTCGACCAGCGCGTC
GACCCGCTGGCGCGCGGCATCGAGTCGCTGAGCCCGGCCCAGCGCGACGTCCTGGCCGTACTGCCACAGCTC
AACGCGGTGCAGAATCTCGCCGGCGACGCGCCAAGCTGGGCCGAAGGCTACGGGCTGTACCAGGGCGACATG
CTCGGCGAGGAGTCCGCCAGCGTCTACCGCAAGCTGCTGATCGCGGTGTTCGCCCCGCGCCTGGTGACCCGC
ATCGAGGAACAGTTGCGCTCCGGCGGCAGCAGCGATTTCCTCTACGAGGGCCTGAAGGCCTACCTGATGCTC
GGCAGCCCGGACCATTACGACGCCGACTTCATCAAGGCCTGGATCAGCCTCGACTGGGAACGCAACCTGCCG
CGCGACCTCTCGCCGGAACAGCGCCAGGCGCTGCACGCGCACCTCGACGCGTTGCTCGAACGACGGCCGCCG
TCGGCGCGCCTGGACCAGGACCTGGTCGAGGACCTGCGCCGCCAGTTGCAGCAACTACCGGTGGCGCAGCGG
GTCTACGACCGGGTCAAGCGGCAGAGGCTGCCCAAGGACGTGCCCGACTTCCGCATCAGCGACGCCGCCGGC
CGCGACGCACCGCTGGTGTTCGCGCGCAAGAGCGGCAAGCCGCTCACCGACCCGCTCAGCGGCTTCTTCACC
TACCGCGGCTATCGCGAGGTGTTCCTCACCGCCAGCCTCAGCCAGGCCGGCACCATCGCCGAGGAACAGTGG
GTGCTCGGGCGCGACCTGAACGATGCCGGCGATGCCGCCAACCTGGCCCTCGACGTGCGTCGCCTGTACTTC
CAGGACTACCTGCGGCAATGGGACGACCTGCTCGCCGACCTCACCGTGGTGCCGATCACCAACGTCACCCAG
GCCGCCGACGTGCTGCGCATTCTCTCCGGGCCGACCTCGCCGTTCCGCAAGCTGCTCGAGGCGGTGGCCCGC
GAGACCGACCTGCAGAAGGGCGACCGGCTGGTCGCCGCGCAAGTGAAGAAGGCCGCCGACGGCACCGTGGAC
AAGCTCAAGCAGCGCCTCGGCTCGCTGGTCGGCCAGGAGGAGGAGGAAGGCGCCCGCGAACAGCCGCAGCAG
GCCGACAGCGACCCGATCAGCGCCCACTTCGCCGAACTCAACAGCCTGGTCAGCAAGGGCGAGGGCGGCAAC
GAGCCGGCGCCGATCGACAGCCTGCTGGAGGACATGAACGCGCTCTACGTACAGGTCAGCGCCATGGCCGGA
GCCAGCGGCGACTCGCTGCTCGGCGACGCCAAGAACCAGGTGGCCGCCGCCGCCTCGCGCGTGGCCCTCAGC
GCCGAGCGCCAGCCGCCGGTGGTCCAGGGCCTGGTGAAGAACGTGGTCAACTCCACCACCAGCAGCATGATG
GGCAGCGTGCGCAACCAGCTCAACGCGGCCTGGATCAGCGACGTGGTCAGCGTCTACCGGCAGTCCCTGGCC
GGGCGCTACCCGATCGCCGCCGGCAGCTCGCGCGACGCCACCCTGGAAGACTTCGGCCACTTCTTCGGTGCC
GGTGGGGTGATGGACAGCTACTTCCGCCAGTACCTGCAACCCTACGTCGACACCTCCGCCAGCACCTGGCGC
TGGCAGCCCGGCGCGGCGCAGAAGCTCGGCATCAACCCCGGCGTGCTGCACACCTTCCAGCGCGCGGCGGCG
ATCCGCGACGCCTTCTTCCGCTCCGGCGGCATGCAGCCGGCGGTGCGCTTCGAACTCAAGCCGGTGACCATG
GACGCGGCGATCAGCCAGTTCATCCTCGACCTCGACGGCCAGCAGCTGACCTACGACCACGGCCCCGCCCGC
CCGGTGGCGATGCAGTGGCCGAGCGCCAACGGCCTCGGCGTGGTCCGCCTGACGGTGACGCCGCCGCCCAGC
AGCGGCCGTTCCGGCCTGACCCTGGAGGGCCCCTGGGCCTGGTTCCGCCTGCTCGACCAGTCGGACCTGGAA
CGCGGCAACTCGCCGGACCGCTTCACCCTGCGGCTGCGCATCGACGGCTCCAGCATCGCCTGCGAGCTGCGC
GCCAGCAGCGCCTTCAACCCCTTCAAGAGCCGGGTCGTGTCCGGCTTCAGCCTCCCGGAGCGCCTTTGA