ViewGene
Locus Name:
GeneID:
Location:

GeneID:4761
TrivialName: PA14_42400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42400
PAO1 Ortholog Locus:PA1712
Sequence Length:414
Protein Length:137
Start: 3778237
Stop: 3777824
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05101.1|AE004597_15 (AE004597) exoenzyme S synthesis protein B [Pseudomonas aeruginosa PAO1]
Identities = 134/137 (97%), Positives = 135/137 (98%)
Sequence:
ATGCTGTTGCCGCTGGCGTTGCTGCTCGGCGGTTGCGTCAGCCAGCCCGCGCCGATGTCGCCGAAGGTGACG
GTGGGCGGTTCGGTGGGCGGCGTTTCCCTGCAGGCGCGCCAGGCGCAACTCAGGCTGCGCCTGTATGCCGTC
GTTCAGGGAGGGATGCAAACGATTGCCGAGCGGCGCTACCGGGTGTCCGGGTTGCCGTTGCGCTATGCGTTC
GATCTGGAGGTCGACAGGTTGGAGGGCGAGGCATTGTACCTACGCACCGAGCTTTCCTGGGTGGGCGTCGCG
GCGGTCCAGGCGAGCGCCTGGCAGCGGGTGGCGGCGGGCGTCGATGAGCGGGTCCGGCTGGTTCGGCGCGAC
TGTTTTCCGAATTGTACGACCGCTCGCCCGGAAGAAAGATCTGGCAACGATTGA
Translation:
MLLPLALLLGGCVSQPAPMSPKVTVGGSVGGVSLQARQAQLRLRLYAVVQGGMQTIAERRYRVSGLPLRYAF
DLEVDRLEGEALYLRTELSWVGVAAVQASAWQRVAAGVDERVRLVRRDCFPNCTTARPEERSGND*
AnnotationID:4766GeneID:4761
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:19
Gene Name:exsB
Confidence Code:1
GeneProduct:exoenzyme S synthesis protein B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:S synthesis trans-regulatory protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9522




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37845




  
Author/Investigator(s):
        Frank DW, Iglewski BH.





  
Title:
        Cloning and sequence analysis of a trans-regulatory locus required for exoenzyme S synthesis in Pseudomonas aeruginosa.




  
PubMed:
        1655713


MedLine:
        




    
Source:
J Bacteriol. 1991 Oct;173(20):6460-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1655713









           
Homologs By Global Alignment 

           

       



     
Gene ID:4761
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7132
                           PA1712_tr
                           translation of PA1712
                           137
                           97.81
                           98.54
                           0
                           678.0
     

     
     
187357
                           gb|AAG05101.1|AE004597_15
                           (AE004597) exoenzyme S synthesis protein B [Pseudomonas aeruginosa PAO1]
                           137
                           97.81
                           98.54
                           0
                           678.0
     

     
     
187358
                           gb|AAA25815.1|
                           (M64975) S synthesis trans-regulatory protein [Pseudomonas aeruginosa]
                           137
                           97.08
                           97.81
                           0
                           670.0
     

     






      

          
GC ORFID: 47763How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1712Glimmer Score: 

          
Start: 1175672Stop: 1176085

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1712 translation of PA1712Homolog Bit Score 265.0

          
Other Homologs:  t_PA1712 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTTGCCGCTGGCGTTGCTGCTCGGCGGTTGCGTCAGCCAGCCCGCGCCGATGTCGCCGAAGGTGACG 
GTGGGCGGTTCGGTGGGCGGCGTTTCCCTGCAGGCGCGCCAGGCGCAACTCAGGCTGCGCCTGTATGCCGTC 
GTTCAGGGAGGGATGCAAACGATTGCCGAGCGGCGCTACCGGGTGTCCGGGTTGCCGTTGCGCTATGCGTTC 
GATCTGGAGGTCGACAGGTTGGAGGGCGAGGCATTGTACCTACGCACCGAGCTTTCCTGGGTGGGCGTCGCG 
GCGGTCCAGGCGAGCGCCTGGCAGCGGGTGGCGGCGGGCGTCGATGAGCGGGTCCGGCTGGTTCGGCGCGAC 
TGTTTTCCGAATTGTACGACCGCTCGCCCGGAAGAAAGATCTGGCAACGATTGA