ViewGene
Locus Name:
GeneID:
Location:

GeneID:4735
TrivialName: PA14_01260
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:41
LocusName:PA14_01260
PAO1 Ortholog Locus:
Sequence Length:639
Protein Length:212
Start: 124921
Stop: 124283
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO58683.1| (AE016875) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 133/211 (63%), Positives = 160/211 (75%)
Sequence:
ATGAACACCGCTGCCCTCCGTGAACTCATCCAGCAGGCGCACCTCAGCGAAGCCCGCCACGGTCACCTGGCT
GATCTGATAGCCAGCTGCCTGCCCCGCCTGCATCGCACCATCCAGCCGCAAGGCGAGAACACGGAAGACATA
CTCACCCGCTTCGTCCACGCCTACGTCGAACAGGTACCGGACCTGCTCGACGCCGCCAACAGCGTGGCCCGC
GAAGCCGGCATCGAGGAACGGATCAAGCCGGTGCTGAAGGTCGCCGAGCAGTTCTTCCTCACCCCGCCGGCG
TTGCTCGCCGGCCACGACGGCCTCGACGCCCTGCTCGATGAGGCCTACCTGGCGCACCGCCTGGTGGAAGAA
GTGAACGACCGCTACATCGCCCACTTCGGCCAGGCGCTGATCCCACTGGACACCACCGTGGCCAACCTGGTG
GCCCACCAGTTGATCGGCGAGCCCTTCGCCAACCGGCTGGACGAAGCCGTCCACCATGCAGTGGAGAACATG
CTCGACGCCACCACCTTCGACGCCGACTCGGCCCGCGCCTACCGCGAGAACCTGAAGAACCCGCGGGTGGTC
GCCGCCTGGCAGCAGTGGCCGTGCCTGTCGAAGCAGCTCGGGGTGGAACTCAGCCTGGGCTGA
Translation:
MNTAALRELIQQAHLSEARHGHLADLIASCLPRLHRTIQPQGENTEDILTRFVHAYVEQVPDLLDAANSVAR
EAGIEERIKPVLKVAEQFFLTPPALLAGHDGLDALLDEAYLAHRLVEEVNDRYIAHFGQALIPLDTTVANLV
AHQLIGEPFANRLDEAVHHAVENMLDATTFDADSARAYRENLKNPRVVAAWQQWPCLSKQLGVELSLG*
AnnotationID:4740GeneID:4735
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4735
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
186974
                           gb|AAO58683.1|
                           (AE016875) hypothetical protein PSPTO5257 [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           61.57
                           74.07
                           4
                           681.0
     

     






      

          
GC ORFID: 47737How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene320Glimmer Score: 

          
Start: 5926260Stop: 5925622

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3201Homolog Bit Score 270.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene320 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACACCGCTGCCCTCCGTGAACTCATCCAGCAGGCGCACCTCAGCGAAGCCCGCCACGGTCACCTGGCT 
GATCTGATAGCCAGCTGCCTGCCCCGCCTGCATCGCACCATCCAGCCGCAAGGCGAGAACACGGAAGACATA 
CTCACCCGCTTCGTCCACGCCTACGTCGAACAGGTACCGGACCTGCTCGACGCCGCCAACAGCGTGGCCCGC 
GAAGCCGGCATCGAGGAACGGATCAAGCCGGTGCTGAAGGTCGCCGAGCAGTTCTTCCTCACCCCGCCGGCG 
TTGCTCGCCGGCCACGACGGCCTCGACGCCCTGCTCGATGAGGCCTACCTGGCGCACCGCCTGGTGGAAGAA 
GTGAACGACCGCTACATCGCCCACTTCGGCCAGGCGCTGATCCCACTGGACACCACCGTGGCCAACCTGGTG 
GCCCACCAGTTGATCGGCGAGCCCTTCGCCAACCGGCTGGACGAAGCCGTCCACCATGCAGTGGAGAACATG 
CTCGACGCCACCACCTTCGACGCCGACTCGGCCCGCGCCTACCGCGAGAACCTGAAGAACCCGCGGGTGGTC 
GCCGCCTGGCAGCAGTGGCCGTGCCTGTCGAAGCAGCTCGGGGTGGAACTCAGCCTGGGCTGA