ViewGene
Locus Name:
GeneID:
Location:

GeneID:4734
TrivialName: PA14_00530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00530
PAO1 Ortholog Locus:PA0042
Sequence Length:396
Protein Length:131
Start: 54909
Stop: 55304
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03432.1|AE004444_1 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 130/131 (99%)
Sequence:
ATGCCGGTACTGGCTCTGAGACTCACCGCCCTGGCGGCCCTTGCGATCAGCGTGTCGGGGTGCGTCATGGAG
GCCTATGGCAGTCGCGCGCGTAGCGATGCGCAGTCCTGGATCGGCTTGCCGATCCAGGACGTGATCAAGCGC
TTCGGCGAGCCGGAACGTGTGACGGGGGATGCCGCCAGGCAGAAGTACGTGTGGAAGGAGTACGAGAACTAT
AGCCACGACTACGACTACACCTACTACGAGCAGGGCCATGGCAATACGCCCAACAGCTCGGTCCTGAACCAG
AAGACCGGCACGGCCAACCAGAGCGGCTATTACACCTGCATCTACGAGTTCTTTGCCGACGCCTCGGGCAGG
GTGGTCGATGCGACCGCGCGGGGTGAGTGCCGCTAG
Translation:
MPVLALRLTALAALAISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENY
SHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR*
AnnotationID:4739GeneID:4734
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0042
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4734
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7104
                           PA0042_tr
                           translation of PA0042
                           131
                           99.23
                           99.23
                           0
                           691.0
     

     
     
186973
                           gb|AAG03432.1|AE004444_1
                           (AE004444) hypothetical protein PA0042 [Pseudomonas aeruginosa PAO1]
                           131
                           99.23
                           99.23
                           0
                           691.0
     

     






      

          
GC ORFID: 47736How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0042Glimmer Score: 

          
Start: 5856246Stop: 5856641

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0042 translation of PA0042Homolog Bit Score 270.0

          
Other Homologs:  t_PA0042 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGTACTGGCTCTGAGACTCACCGCCCTGGCGGCCCTTGCGATCAGCGTGTCGGGGTGCGTCATGGAG 
GCCTATGGCAGTCGCGCGCGTAGCGATGCGCAGTCCTGGATCGGCTTGCCGATCCAGGACGTGATCAAGCGC 
TTCGGCGAGCCGGAACGTGTGACGGGGGATGCCGCCAGGCAGAAGTACGTGTGGAAGGAGTACGAGAACTAT 
AGCCACGACTACGACTACACCTACTACGAGCAGGGCCATGGCAATACGCCCAACAGCTCGGTCCTGAACCAG 
AAGACCGGCACGGCCAACCAGAGCGGCTATTACACCTGCATCTACGAGTTCTTTGCCGACGCCTCGGGCAGG 
GTGGTCGATGCGACCGCGCGGGGTGAGTGCCGCTAG