ViewGene

Locus Name:
GeneID:
Location:

GeneID:4728
TrivialName: PA14_05060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05060
PAO1 Ortholog Locus:PA0388
Sequence Length:420
Protein Length:139
Start: 444606
Stop: 444187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03777.1|AE004476_7 (AE004476) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/139 (99%), Positives = 139/139 (100%)
Sequence:
ATGCGCCGCTTCACCGCTTTCGTCCTCGGCCTCTGCCTGAGCCTGCCGGTCCTCGCCGAGCAGGTGCAGCGC
TTCGGCGACCTGGACGTCCACTACAACGTGTTCAACTCCAGCTTCCTCCAACCCAACGTGGCCAGCGCGGTC
GGCCTGGTACGCAGCAAGGCGCAGGGCGTGATCAACGTGGTGCCGATGGAGAAAGGCAAGCCGGTGGAAGCC
AGCGTGACCGGCTCCGCCAAGGACCTGACCGGCAAGGTCATTCCCCTGGAGTTCCGCCGGGTCAGCGAGGAA
GGCGCCATCTACAACCTGGCGCAATTCCCGATCAGCCAGCGCGAGACCCTGGTCTTCACCATCAAGGTCGAG
GCCAAGGGCGAACCTGCGCAAACCTTCAGTTTCAACAAGGAAATCTTCCCGGACGAATGA
Translation:
MRRFTAFVLGLCLSLPVLAEQVQRFGDLDVHYNVFNSSFLQPNVASAVGLVRSKAQGVINVVPMEKGKPVEA
SVTGSAKDLTGKVIPLEFRRVSEEGAIYNLAQFPISQRETLVFTIKVEAKGEPAQTFSFNKEIFPDE*
AnnotationID:4733GeneID:4728
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9457
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26597
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33710
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4728_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4728

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7098 PA0388_tr translation of PA0388 139 99.28 99.99 0 693.0
186944 gb|AAG03777.1|AE004476_7 (AE004476) hypothetical protein PA0388 [Pseudomonas aeruginosa PAO1] 139 99.28 99.99 0 693.0
186945 gb|AAN70664.1|AE016710_9 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 145 48.96 68.27 7 363.0
GC ORFID: 47730How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0388Glimmer Score:
Start: 6245948Stop: 6245529
Length: 420
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0388 translation of PA0388Homolog Bit Score 271.0
Other Homologs: t_PA0388 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGCTTCACCGCTTTCGTCCTCGGCCTCTGCCTGAGCCTGCCGGTCCTCGCCGAGCAGGTGCAGCGC
TTCGGCGACCTGGACGTCCACTACAACGTGTTCAACTCCAGCTTCCTCCAACCCAACGTGGCCAGCGCGGTC
GGCCTGGTACGCAGCAAGGCGCAGGGCGTGATCAACGTGGTGCCGATGGAGAAAGGCAAGCCGGTGGAAGCC
AGCGTGACCGGCTCCGCCAAGGACCTGACCGGCAAGGTCATTCCCCTGGAGTTCCGCCGGGTCAGCGAGGAA
GGCGCCATCTACAACCTGGCGCAATTCCCGATCAGCCAGCGCGAGACCCTGGTCTTCACCATCAAGGTCGAG
GCCAAGGGCGAACCTGCGCAAACCTTCAGTTTCAACAAGGAAATCTTCCCGGACGAATGA