ViewGene
Locus Name:
GeneID:
Location:

GeneID:4728
TrivialName: PA14_05060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05060
PAO1 Ortholog Locus:PA0388
Sequence Length:420
Protein Length:139
Start: 444606
Stop: 444187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03777.1|AE004476_7 (AE004476) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/139 (99%), Positives = 139/139 (100%)
Sequence:
ATGCGCCGCTTCACCGCTTTCGTCCTCGGCCTCTGCCTGAGCCTGCCGGTCCTCGCCGAGCAGGTGCAGCGC
TTCGGCGACCTGGACGTCCACTACAACGTGTTCAACTCCAGCTTCCTCCAACCCAACGTGGCCAGCGCGGTC
GGCCTGGTACGCAGCAAGGCGCAGGGCGTGATCAACGTGGTGCCGATGGAGAAAGGCAAGCCGGTGGAAGCC
AGCGTGACCGGCTCCGCCAAGGACCTGACCGGCAAGGTCATTCCCCTGGAGTTCCGCCGGGTCAGCGAGGAA
GGCGCCATCTACAACCTGGCGCAATTCCCGATCAGCCAGCGCGAGACCCTGGTCTTCACCATCAAGGTCGAG
GCCAAGGGCGAACCTGCGCAAACCTTCAGTTTCAACAAGGAAATCTTCCCGGACGAATGA
Translation:
MRRFTAFVLGLCLSLPVLAEQVQRFGDLDVHYNVFNSSFLQPNVASAVGLVRSKAQGVINVVPMEKGKPVEA
SVTGSAKDLTGKVIPLEFRRVSEEGAIYNLAQFPISQRETLVFTIKVEAKGEPAQTFSFNKEIFPDE*
AnnotationID:4733GeneID:4728
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33710




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4728_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4728
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7098
                           PA0388_tr
                           translation of PA0388
                           139
                           99.28
                           99.99
                           0
                           693.0
     

     
     
186944
                           gb|AAG03777.1|AE004476_7
                           (AE004476) hypothetical protein PA0388 [Pseudomonas aeruginosa PAO1]
                           139
                           99.28
                           99.99
                           0
                           693.0
     

     
     
186945
                           gb|AAN70664.1|AE016710_9
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           145
                           48.96
                           68.27
                           7
                           363.0
     

     






      

          
GC ORFID: 47730How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0388Glimmer Score: 

          
Start: 6245948Stop: 6245529

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0388 translation of PA0388Homolog Bit Score 271.0

          
Other Homologs:  t_PA0388 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCTTCACCGCTTTCGTCCTCGGCCTCTGCCTGAGCCTGCCGGTCCTCGCCGAGCAGGTGCAGCGC 
TTCGGCGACCTGGACGTCCACTACAACGTGTTCAACTCCAGCTTCCTCCAACCCAACGTGGCCAGCGCGGTC 
GGCCTGGTACGCAGCAAGGCGCAGGGCGTGATCAACGTGGTGCCGATGGAGAAAGGCAAGCCGGTGGAAGCC 
AGCGTGACCGGCTCCGCCAAGGACCTGACCGGCAAGGTCATTCCCCTGGAGTTCCGCCGGGTCAGCGAGGAA 
GGCGCCATCTACAACCTGGCGCAATTCCCGATCAGCCAGCGCGAGACCCTGGTCTTCACCATCAAGGTCGAG 
GCCAAGGGCGAACCTGCGCAAACCTTCAGTTTCAACAAGGAAATCTTCCCGGACGAATGA