ViewGene
Locus Name:
GeneID:
Location:

GeneID:4705
TrivialName: PA14_37350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37350
PAO1 Ortholog Locus:PA2107
Sequence Length:399
Protein Length:132
Start: 3324471
Stop: 3324869
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05495.1|AE004638_5 (AE004638) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/132 (99%), Positives = 131/132 (99%)
Sequence:
ATGACCCGCGCCATCAACGATCCCGGAAACGAAGACCCCGGTTCCCTGCTGGAAACCGACGCCGACGCCCTG
CTCGGCGGTGCCGCCGCCCAGGCGCCGGAAGAGCGCTGCCGGCTCGCAGCCCAGGCCTGCATCCGCGCGTGC
GAGCGCTACCTGGCGCTCTGCATCGAGTCCAGCAGGGAACAACGCCAGCACGCCGGCGACTGCGCCGACCTC
TGCCGCCTCGCTGCCCTGCTGCTGGAGCGCCGCAGCCCATGGGCGCCGGCCGCCTGCGAGCTGGCGGCGCGC
TATGCCCTGGCATGCGCGGAGCGTTGCGATGGCGACGAGCCGCTGGAGCGCGAATGTGCGGGTGCCTGCCGG
CGCTTCGTCGAGGCCTGCCGGCCATTGTTGCCGGCCTGA
Translation:
MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQACIRACERYLALCIESSREQRQHAGDCADL
CRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLPA*
AnnotationID:4711GeneID:4705
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2107
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4705
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7075
                           PA2107_tr
                           translation of PA2107
                           132
                           99.24
                           99.24
                           0
                           697.0
     

     
     
186571
                           gb|AAG05495.1|AE004638_5
                           (AE004638) hypothetical protein PA2107 [Pseudomonas aeruginosa PAO1]
                           132
                           99.24
                           99.24
                           0
                           697.0
     

     






      

          
GC ORFID: 47707How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2107Glimmer Score: 

          
Start: 1629443Stop: 1629045

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2107 translation of PA2107Homolog Bit Score 273.0

          
Other Homologs:  t_PA2107 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGCGCCATCAACGATCCCGGAAACGAAGACCCCGGTTCCCTGCTGGAAACCGACGCCGACGCCCTG 
CTCGGCGGTGCCGCCGCCCAGGCGCCGGAAGAGCGCTGCCGGCTCGCAGCCCAGGCCTGCATCCGCGCGTGC 
GAGCGCTACCTGGCGCTCTGCATCGAGTCCAGCAGGGAACAACGCCAGCACGCCGGCGACTGCGCCGACCTC 
TGCCGCCTCGCTGCCCTGCTGCTGGAGCGCCGCAGCCCATGGGCGCCGGCCGCCTGCGAGCTGGCGGCGCGC 
TATGCCCTGGCATGCGCGGAGCGTTGCGATGGCGACGAGCCGCTGGAGCGCGAATGTGCGGGTGCCTGCCGG 
CGCTTCGTCGAGGCCTGCCGGCCATTGTTGCCGGCCTGA