ViewGene
Locus Name:
GeneID:
Location:

GeneID:4679
TrivialName: PA14_10310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10310
PAO1 Ortholog Locus:PA4146
Sequence Length:405
Protein Length:134
Start: 888969
Stop: 888565
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07533.1|AE004831_5 (AE004831) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
GTGCGTGCTCGGGCTGGCGAACAAGGCCACGCCGGAAGCGCAGGCGATCCAGGCCTTGGGATTGAGCCATTG
CAGGAGCACGCCCTGGAAGAACCCGGGGACCCCGTTTTCCTCCAGGGCCAGGCGTGGATCCGCGGTGGCGAT
GCGGTAGCCCACATGAGCGATGAACGCCGCGCCGGCCATCCCCAGGTAGTCGAAGAAGCGCGGGTAGGCCTC
GATCGCGCGGACGAACCAGAAGCCGACGAAGGCCAGCAGCAGGACGAAGCCGAGGGTGGCGCCGGTGACGAA
CGGCAGGGTCCGGCGGAAACCATGGTTGGCGCCGGAAGCGACGATGGTCAGGTTCACCGGACCGGGGGAAAT
CGACAGGCTCAGGGAGAACGCGCCCATGGCGAGCAGCAGGGCTAG
Translation:
MRARAGEQGHAGSAGDPGLGIEPLQEHALEEPGDPVFLQGQAWIRGGDAVAHMSDERRAGHPQVVEEARVGL
DRADEPEADEGQQQDEAEGGAGDERQGPAETMVGAGSDDGQVHRTGGNRQAQGERAHGEQQG*
AnnotationID:4685GeneID:4679
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4146
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15154




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26499




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4679
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7048
                           PA4146_tr
                           translation of PA4146
                           134
                           99.99
                           99.99
                           0
                           710.0
     

     
     
186098
                           gb|AAG07533.1|AE004831_5
                           (AE004831) hypothetical protein PA4146 [Pseudomonas aeruginosa PAO1]
                           134
                           99.25
                           99.99
                           0
                           707.0
     

     






      

          
GC ORFID: 47681How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4146Glimmer Score: 

          
Start: 4064968Stop: 4065372

          
Length: 405


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4146 translation of PA4146Homolog Bit Score 278.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCGTGCTCGGGCTGGCGAACAAGGCCACGCCGGAAGCGCAGGCGATCCAGGCCTTGGGATTGAGCCATTG 
CAGGAGCACGCCCTGGAAGAACCCGGGGACCCCGTTTTCCTCCAGGGCCAGGCGTGGATCCGCGGTGGCGAT 
GCGGTAGCCCACATGAGCGATGAACGCCGCGCCGGCCATCCCCAGGTAGTCGAAGAAGCGCGGGTAGGCCTC 
GATCGCGCGGACGAACCAGAAGCCGACGAAGGCCAGCAGCAGGACGAAGCCGAGGGTGGCGCCGGTGACGAA 
CGGCAGGGTCCGGCGGAAACCATGGTTGGCGCCGGAAGCGACGATGGTCAGGTTCACCGGACCGGGGGAAAT 
CGACAGGCTCAGGGAGAACGCGCCCATGGCGAGCAGCAGGGCTAG