ViewGene
Locus Name:
GeneID:
Location:

GeneID:4677
TrivialName: PA14_25500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25500
PAO1 Ortholog Locus:PA2982
Sequence Length:441
Protein Length:146
Start: 2229211
Stop: 2229651
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06370.1|AE004723_14 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 146/146 (100%), Positives = 146/146 (100%)
Sequence:
GTGAAATTCCGCCGCAGACGGGCGGGTGCCGCCCGTGAAGACGTCTTCATCAACCTGGCGTCGCTGATCGAC
GTGATCTTCGTCCTGCTGCTGTTCTTCGTGGTCAGTACCACCTTCACCCGCCCCGAGCAGCTCAACATCGAG
CTGCCATCGGCGGAGAGCGGCGAAACCGCCGGCACCGAGCAGAAGCAACTGGAACTCTCGGTGGATGCCGAG
GGGCACTACGCCTTGAACGGGCAGGCGCTGGCCAAGAGCGACCTGGCCACCCTGATGGCGGCGATGCAGCGT
GAATCGGCGGGCGACAACAACCTGCCGGTGGTGATCAGCGCCGATGCCAAGTCCACCCACCAGTCGGTGGTC
ACGGCGATGGACGCAGCGGGCAAGCTGGGCTTCGTCCACCTGCGCATCACCACGGTCGAGAACACGGCGGCC
AAGCCCTGA
Translation:
MKFRRRRAGAAREDVFINLASLIDVIFVLLLFFVVSTTFTRPEQLNIELPSAESGETAGTEQKQLELSVDAE
GHYALNGQALAKSDLATLMAAMQRESAGDNNLPVVISADAKSTHQSVVTAMDAAGKLGFVHLRITTVENTAA
KP*
AnnotationID:4683GeneID:4677
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 09:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative biopolymer transport protein
Cell Localization:()
Synonyms:exbD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0848,pfam02472
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57313.1| (AE016869) biopolymer transport protein ExbD/TolR family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 143

 Score =  167 bits (424), Expect = 1e-41
 Identities = 88/145 (60%), Positives = 113/145 (77%), Gaps = 4/145 (2%)

>gb|AAN67518.1|AE016380_6 (AE016781) ExbD/TolR family protein [Pseudomonas putida KT2440]
          Length = 144

 Score =  167 bits (423), Expect = 2e-41
 Identities = 92/147 (62%), Positives = 109/147 (74%), Gaps = 4/147 (2%)








 
Structural Features:
COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]
CD-Length = 137 residues, 100.0% aligned
Score =  103 bits (258), Expect = 1e-23
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 6/143 (4%)

pfam02472, ExbD, Biopolymer transport protein ExbD/TolR.
CD-Length = 129 residues,  96.1% aligned
Score = 80.6 bits (199), Expect = 7e-17
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 3/127 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:15152




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36072




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4677_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4677
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7046
                           PA2982_tr
                           translation of PA2982
                           146
                           99.99
                           99.99
                           0
                           711.0
     

     
     
186093
                           gb|AAG06370.1|AE004723_14
                           (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           146
                           99.31
                           99.99
                           0
                           708.0
     

     
     
186094
                           emb|CAB50919.1|
                           (AJ243354) hypothetical protein [Pseudomonas stutzeri]
                           147
                           63.94
                           76.87
                           6
                           451.0
     

     
     
186096
                           gb|AAN67518.1|AE016380_6
                           (AE016781) ExbD/TolR family protein [Pseudomonas putida KT2440]
                           147
                           61.90
                           74.14
                           4
                           424.0
     

     
     
186095
                           gb|AAO57313.1|
                           (AE016869) biopolymer transport protein ExbD/TolR family [Pseudomonas syringae pv. tomato str. DC3000]
                           147
                           59.18
                           76.87
                           5
                           425.0
     

     






      

          
GC ORFID: 47679How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2982Glimmer Score: 

          
Start: 2724714Stop: 2724274

          
Length: 441


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2982 translation of PA2982Homolog Bit Score 278.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2176 (ORF: BLASTX 168.0), t_PA2982 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAATTCCGCCGCAGACGGGCGGGTGCCGCCCGTGAAGACGTCTTCATCAACCTGGCGTCGCTGATCGAC 
GTGATCTTCGTCCTGCTGCTGTTCTTCGTGGTCAGTACCACCTTCACCCGCCCCGAGCAGCTCAACATCGAG 
CTGCCATCGGCGGAGAGCGGCGAAACCGCCGGCACCGAGCAGAAGCAACTGGAACTCTCGGTGGATGCCGAG 
GGGCACTACGCCTTGAACGGGCAGGCGCTGGCCAAGAGCGACCTGGCCACCCTGATGGCGGCGATGCAGCGT 
GAATCGGCGGGCGACAACAACCTGCCGGTGGTGATCAGCGCCGATGCCAAGTCCACCCACCAGTCGGTGGTC 
ACGGCGATGGACGCAGCGGGCAAGCTGGGCTTCGTCCACCTGCGCATCACCACGGTCGAGAACACGGCGGCC 
AAGCCCTGA